Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00302
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo...    29   2.0  
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   2.7  
At4g32020.1 68417.m04558 expressed protein NuLL                        29   2.7  
At2g29600.1 68415.m03594 kelch repeat-containing F-box family pr...    29   3.6  
At5g05360.2 68418.m00577 expressed protein similar to unknown pr...    28   4.7  
At5g05360.1 68418.m00578 expressed protein similar to unknown pr...    28   4.7  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    28   4.7  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   6.2  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    27   8.2  

>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase familiy protein
           similar to SP|O14072 Cation-transporting ATPase 4 (EC
           3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
           accession IPR001757: ATPase, E1-E2 type; contains Pfam
           profile PF00702: haloacid dehalogenase-like hydrolase
          Length = 1179

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -1

Query: 522 IDRPCFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTD 388
           +D  CF    +   +DQA  C   P + S   E+   H R  +TD
Sbjct: 73  VDFKCFVQFSKVNSIDQADACKVTPAKFSGSKEVVPLHFRSQMTD 117


>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 155 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 45
           A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At4g32020.1 68417.m04558 expressed protein NuLL
          Length = 181

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 355 CP-RTGSRGSFKRRRAFPPRHHSARLERNTVRPPIYRPRTA 236
           CP R     S  R R  PPR  S+R     V PP+  PR A
Sbjct: 28  CPNRQKKTVSNNRTRRSPPRSQSSRSSSPPVAPPLPPPRAA 68


>At2g29600.1 68415.m03594 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 415

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 239 GARSINRRAHGVSFQACRVVTWRKRSSXFKTPA*SGSRTLPGGEFDWGGTS 391
           G RS+NRRA  V    CR  TWR         + + S  + G  +  GG++
Sbjct: 167 GLRSLNRRAKTVFVIDCRFHTWRYLQEMQVARSYAASAVIDGMIYVVGGST 217


>At5g05360.2 68418.m00577 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 153

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 264 ARRFIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 130
           A R     P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 12  AIRLSSENPTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At5g05360.1 68418.m00578 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 163

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 264 ARRFIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 130
           A R     P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 12  AIRLSSENPTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 387 VPPQSNSPPGSVLE--PDHAGVLNXDERFRHVTTLHAWNET 271
           +P  SNS P +VL      A V        H TT+H W+ET
Sbjct: 5   LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 249 DRAPLPPNRVSNETMKVVVFQRRSRET 169
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 167 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 60
           SPT +  + SP  A  ++ +  +S P +SPK P P++
Sbjct: 41  SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,919,152
Number of Sequences: 28952
Number of extensions: 321536
Number of successful extensions: 951
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)