Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00301
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 110 2e-25
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 74 2e-14
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 69 5e-13
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 68 1e-12
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 67 3e-12
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 66 5e-12
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 66 5e-12
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 64 2e-11
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 64 2e-11
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 64 2e-11
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 62 1e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 58 1e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 58 2e-09
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 58 2e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 56 4e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 56 5e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 55 1e-08
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 55 1e-08
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 52 7e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 51 2e-07
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 45 1e-05
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 39 7e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 36 0.006
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.1
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 27 3.8
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 26 5.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 8.7
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 8.7
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 110 bits (264), Expect = 2e-25
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +3
Query: 15 TRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 194
TRG EFE++ LKRELLMGIFE G+E+PSPIQE SIPIALSG+D+LARAKNGTGKT A+ I
Sbjct: 41 TRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVI 100
Query: 195 PVLEQV 212
P LE+V
Sbjct: 101 PSLEKV 106
Score = 93.9 bits (223), Expect = 2e-20
Identities = 41/80 (51%), Positives = 57/80 (71%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLD 688
GT LRDDI+R+ V +++ TPGR++DL K VA +C V+DEADKLLS +F +++
Sbjct: 149 GTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIE 208
Query: 689 MVISRLPKERQILLFSATFP 748
++S PK RQI L+SATFP
Sbjct: 209 QLLSYFPKNRQISLYSATFP 228
Score = 66.9 bits (156), Expect = 3e-12
Identities = 31/46 (67%), Positives = 36/46 (78%)
Frame = +3
Query: 381 VDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGAQT 518
VD KK IQ LI+VPTRELALQTSQ+C L KH +++VMVTTG T
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTT 151
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 73.7 bits (173), Expect = 2e-14
Identities = 35/88 (39%), Positives = 54/88 (61%)
Frame = +2
Query: 485 HSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLS 664
H+C G GT +RDD+ + V V++ TPGR+ D++ ++ D +M VLDEAD++LS
Sbjct: 119 HACIG---GTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLS 175
Query: 665 QDFKGMLDMVISRLPKERQILLFSATFP 748
+ FK + + LP Q++L SAT P
Sbjct: 176 RGFKDQIYDIFQLLPPTAQVVLLSATMP 203
Score = 62.1 bits (144), Expect = 8e-11
Identities = 29/61 (47%), Positives = 44/61 (72%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F++ LK ELL GI+ G+E+PS IQ+ +I L +DVLA+A++GTGKT + I VL++
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 210 V 212
+
Sbjct: 81 I 81
Score = 29.1 bits (62), Expect = 0.70
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 381 VDPKKDTIQALIVVPTRELALQTSQICIEL 470
+D QALI+ PTRELA Q ++ + L
Sbjct: 81 IDTSLKQCQALILAPTRELAQQIQKVVVAL 110
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 69.3 bits (162), Expect = 5e-13
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Frame = +2
Query: 503 YRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDK---QVAKMDQCRMLVLDEADKLLSQDF 673
Y G ++D I + + ++++ TPGRMID++ +V + +C LVLDEAD++ F
Sbjct: 526 YGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGF 585
Query: 674 KGMLDMVISRLPKERQILLFSATFP 748
+ + +I+ + +RQ +LFSATFP
Sbjct: 586 EPQVMRIINNIRPDRQTVLFSATFP 610
Score = 48.4 bits (110), Expect = 1e-06
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +3
Query: 45 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV 212
L + + I G+EKP+ IQ +IP SG+DV+ AK G+GKT A+ +P+ +
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHI 480
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 408 ALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
A+I+ PTRELA+Q + C K +IR G
Sbjct: 494 AIIMTPTRELAVQIFRECKPFLKLLNIRACCAYG 527
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 68.1 bits (159), Expect = 1e-12
Identities = 32/91 (35%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Frame = +2
Query: 482 RHSC--NGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADK 655
R++C G RG +RD + + V++ IATPGR++D++D + + LVLDEAD+
Sbjct: 225 RNTCVYGGVPRGPQIRD----LIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADR 280
Query: 656 LLSQDFKGMLDMVISRLPKERQILLFSATFP 748
+L F+ + ++ ++ +RQ ++FSAT+P
Sbjct: 281 MLDMGFEPQIRKIVDQIRPDRQTVMFSATWP 311
Score = 53.6 bits (123), Expect = 3e-08
Identities = 22/61 (36%), Positives = 40/61 (65%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
FEE +L + + G+E P+PIQ+ + P+A+SG+D++ + G+GKT +YC+P +
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 210 V 212
+
Sbjct: 184 I 184
Score = 30.7 bits (66), Expect = 0.23
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 411 LIVVPTRELALQTSQICIELAKHTDIR 491
L++ PTRELA+Q Q C + K + IR
Sbjct: 199 LVLAPTRELAVQIQQECTKFGKSSRIR 225
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 66.9 bits (156), Expect = 3e-12
Identities = 27/69 (39%), Positives = 47/69 (68%)
Frame = +3
Query: 6 RADTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGA 185
+ + + + F+ L + LL IF+KG++ P+PIQ +IP+ L G+DV+ A+ G+GKT A
Sbjct: 63 KGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAA 122
Query: 186 YCIPVLEQV 212
+ IP++E +
Sbjct: 123 FVIPMIEHL 131
Score = 58.4 bits (135), Expect = 1e-09
Identities = 27/80 (33%), Positives = 41/80 (51%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLD 688
G +L + + +++ATPGR + L + ++ +V DEAD+L F L
Sbjct: 176 GVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLT 235
Query: 689 MVISRLPKERQILLFSATFP 748
++ LP RQ LLFSAT P
Sbjct: 236 EILHALPTSRQTLLFSATLP 255
Score = 36.7 bits (81), Expect = 0.004
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +3
Query: 405 QALIVVPTRELALQTSQICIELAKHTDIRVMVTTGAQTFE 524
+ALI+ P RELALQT ++ + +K TD+R + G + E
Sbjct: 141 RALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLE 180
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 66.1 bits (154), Expect = 5e-12
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Frame = +2
Query: 503 YRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGM 682
Y G ++R I +I Q ++ ATPGR++DL+D+ + + LVLDEAD++L F+
Sbjct: 290 YGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQ 349
Query: 683 LDMVISRLP----KERQILLFSATFP 748
+ ++ +ERQ L+FSATFP
Sbjct: 350 IRHIVEGADMTSVEERQTLMFSATFP 375
Score = 57.2 bits (132), Expect = 2e-09
Identities = 26/60 (43%), Positives = 38/60 (63%)
Frame = +3
Query: 24 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 203
NEF L LL I G+ +P+P+Q+ SIPI SG+D++A A+ G+GKT + P+L
Sbjct: 169 NEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 66.1 bits (154), Expect = 5e-12
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +2
Query: 470 GKTHRHSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVA-KMDQCRMLVLDE 646
G+ H S G N +++ R+ + +++ TPGR++ +D+ V +ML+LDE
Sbjct: 135 GRLHSFSAGLIIGGNNYKEEKERL-SRMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDE 193
Query: 647 ADKLLSQDFKGMLDMVISRLPKERQILLFSAT 742
AD++L F+ LD ++S LP RQ +LFSAT
Sbjct: 194 ADRILDMGFRTTLDAIVSSLPVHRQTMLFSAT 225
Score = 43.6 bits (98), Expect = 3e-05
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +3
Query: 102 IQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV 212
IQ+ IP AL G+D+L AK G+GKT A+ +P++E +
Sbjct: 65 IQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENL 101
Score = 29.9 bits (64), Expect = 0.40
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 396 DTIQALIVVPTRELALQTSQICIELAK 476
D + AL++ PTRELA+QT + +++ +
Sbjct: 110 DGLGALVISPTRELAIQTFETLVKIGR 136
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 64.5 bits (150), Expect = 2e-11
Identities = 32/88 (36%), Positives = 54/88 (61%)
Frame = +2
Query: 485 HSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLS 664
H+C G GT++ +DI ++ V+ TPGR+ D++ ++ + +ML+LDEAD+LL+
Sbjct: 121 HACIG---GTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLN 177
Query: 665 QDFKGMLDMVISRLPKERQILLFSATFP 748
Q FK + + LP Q+++ SAT P
Sbjct: 178 QGFKEQIYDIYRYLPPGTQVVVVSATLP 205
Score = 61.3 bits (142), Expect = 1e-10
Identities = 27/63 (42%), Positives = 42/63 (66%)
Frame = +3
Query: 24 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 203
+ FEE LK +LL GI+ G+E PS +Q +I G+DV+A+A++GTGKT + I +L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 204 EQV 212
+ +
Sbjct: 81 QSI 83
Score = 33.1 bits (72), Expect = 0.043
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 393 KDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
+DT QALI+ PTRELA+Q + + L H +++ G
Sbjct: 88 RDT-QALILSPTRELAVQIQNVVLALGDHMNVQCHACIG 125
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 64.1 bits (149), Expect = 2e-11
Identities = 29/70 (41%), Positives = 46/70 (65%)
Frame = +3
Query: 6 RADTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGA 185
R ++ F +F L L I + +EKP+ +Q +IP+AL GKD++A+A+ G+GKT A
Sbjct: 8 REESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAA 67
Query: 186 YCIPVLEQVI 215
Y IP+LE ++
Sbjct: 68 YLIPILELLL 77
Score = 44.4 bits (100), Expect = 2e-05
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +2
Query: 512 TNLRDDIMR--IYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGML 685
TN D + R + ++IATP R + + V +D+ + LV+DEAD +LS + +
Sbjct: 126 TNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDM 185
Query: 686 DMVISRLPKERQILLFSAT 742
+ LP+ Q L SAT
Sbjct: 186 KTLSRSLPRGTQSFLMSAT 204
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +3
Query: 381 VDPKKDTIQALIVVPTRELALQTSQICIEL----AKHTDIRVMVTTGAQTFE 524
+D + I AL++VPTRELA Q + +L +KH + T + T +
Sbjct: 82 IDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQ 133
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 64.1 bits (149), Expect = 2e-11
Identities = 27/67 (40%), Positives = 45/67 (67%)
Frame = +3
Query: 15 TRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 194
T + F+ L R +L G+ G+E P+ IQ+ +IP+AL GKD++ A G+GKT A+ +
Sbjct: 256 TTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIV 315
Query: 195 PVLEQVI 215
P+LE+++
Sbjct: 316 PILERLL 322
Score = 59.3 bits (137), Expect = 6e-10
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMIDLM-DKQVAKMDQCRMLVLDEADKLLSQDFKGML 685
G +L+ + + ++IATPGR ID M + Q ++ ++V+DEAD++L F L
Sbjct: 367 GLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADEL 426
Query: 686 DMVISRLPKERQILLFSAT 742
+ +I PK RQ +LFSAT
Sbjct: 427 NEIIQACPKSRQTMLFSAT 445
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 387 PKK-DTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGAQTFEM 527
PKK T + LI+ PTRELA+Q + ++A TDI V + G + ++
Sbjct: 325 PKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKL 372
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 61.7 bits (143), Expect = 1e-10
Identities = 27/61 (44%), Positives = 40/61 (65%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F +F LK ELL I + G+E PS +Q+ IP ++ G DVL +AK+G GKT + + L+Q
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 210 V 212
+
Sbjct: 113 I 113
Score = 56.4 bits (130), Expect = 4e-09
Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Frame = +2
Query: 500 YYRGTNLRDDIMRIY---QNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLL-SQ 667
+Y G N++ D+ ++ +++ATPGR+ L+ +++ K++ + VLDE DKLL S
Sbjct: 154 FYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESV 213
Query: 668 DFKGMLDMVISRLPKERQILLFSAT 742
D + + V P ++Q+++FSAT
Sbjct: 214 DMRRDIQEVFRATPPQKQVMMFSAT 238
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 58.0 bits (134), Expect = 1e-09
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVA-KMDQCRMLVLDEADKLLSQDFKGML 685
G ++ + + + V++ TPGR++D ++ + + L++DEAD+LL DF ++
Sbjct: 151 GMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPII 210
Query: 686 DMVISRLPKERQILLFSAT 742
D ++ +P ER+ LLFSAT
Sbjct: 211 DKILKIIPHERRTLLFSAT 229
Score = 54.4 bits (125), Expect = 2e-08
Identities = 25/71 (35%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Frame = +3
Query: 12 DTRGNE----FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKT 179
D++ NE F+E + EL + G++ P+PIQ+ +IP+ L+ +DV+ A+ G+GKT
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKT 97
Query: 180 GAYCIPVLEQV 212
A+ +PV++++
Sbjct: 98 AAFALPVIQEL 108
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 57.6 bits (133), Expect = 2e-09
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Frame = +2
Query: 473 KTHRHSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMID-LMDKQVAKMDQCRMLVLDEA 649
K H + G N R + ++ + V +++ATPGR++D L + + R LV+DEA
Sbjct: 186 KYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEA 245
Query: 650 DKLLSQDFKGMLDMVISRLPKE-RQILLFSAT 742
D++L F+ + ++ LP E RQ LLFSAT
Sbjct: 246 DRILEIGFEDEMRQIMKILPSENRQTLLFSAT 277
Score = 53.2 bits (122), Expect = 4e-08
Identities = 26/62 (41%), Positives = 38/62 (61%)
Frame = +3
Query: 27 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 206
+F + L + I E G+E + IQ+ SIP L+G+DVL AK G+GKT A+ IP +E
Sbjct: 90 KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIE 149
Query: 207 QV 212
+
Sbjct: 150 ML 151
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 411 LIVVPTRELALQTSQICIELAKH 479
+I+ PTRELALQ + EL K+
Sbjct: 165 IIISPTRELALQIFGVAKELLKY 187
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 57.6 bits (133), Expect = 2e-09
Identities = 27/63 (42%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG--KDVLARAKNGTGKTGAYCIPVL 203
FEE LK ELL GI+ ++KPS IQE ++P+ LS ++++ ++++GTGKT A+ + +L
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML 175
Query: 204 EQV 212
+V
Sbjct: 176 SRV 178
Score = 56.0 bits (129), Expect = 5e-09
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 548 NVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISR-LPKERQI 724
+ Q++I TPG ++DLM ++ ++ VLDEAD +L Q G M I LP+ QI
Sbjct: 230 DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQI 289
Query: 725 LLFSATF 745
+LFSATF
Sbjct: 290 VLFSATF 296
Score = 31.1 bits (67), Expect = 0.17
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 381 VDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 491
VD QA+ + P+RELA Q + E+ K+T+++
Sbjct: 178 VDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 56.4 bits (130), Expect = 4e-09
Identities = 21/73 (28%), Positives = 44/73 (60%)
Frame = +2
Query: 491 CNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQD 670
C G + ++ Q +++ATPGR++D +++++ + QC +V+DEAD++L
Sbjct: 356 CVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMG 415
Query: 671 FKGMLDMVISRLP 709
F+ ++ ++S LP
Sbjct: 416 FEDDVNKILSSLP 428
Score = 50.4 bits (115), Expect = 3e-07
Identities = 23/58 (39%), Positives = 39/58 (67%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 203
+EE L E+L + + +++PS IQ A+IP+ L KD++ A+ G+GKT A+ IP++
Sbjct: 251 WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLI 308
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 56.0 bits (129), Expect = 5e-09
Identities = 31/79 (39%), Positives = 47/79 (59%)
Frame = +2
Query: 506 RGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGML 685
+GT D +N V+I TPGR+ +++ +K +L+LDEAD L+ F+ L
Sbjct: 118 KGTLTNDLASFREKNPSVVIGTPGRLNEMLSHISSK--HLEILILDEADTLIDMGFQRTL 175
Query: 686 DMVISRLPKERQILLFSAT 742
+IS+LPK+R+ LFSAT
Sbjct: 176 QSIISQLPKQRRTGLFSAT 194
Score = 46.4 bits (105), Expect = 4e-06
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F+ + + L + +G++K +P+Q +IP+ L KD++ A G+GKT AY +P ++
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 210 V 212
V
Sbjct: 63 V 63
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 384 DPKKDTIQALIVVPTRELALQTSQICIEL 470
D + + ALIV PTRELA Q + EL
Sbjct: 67 DTDETGLGALIVAPTRELATQIFNVTKEL 95
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 54.8 bits (126), Expect = 1e-08
Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 6/68 (8%)
Frame = +2
Query: 557 VIIATPGRMIDLM----DKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLP--KER 718
V++ATPGR+ DL+ ++ +A + + + LV+DEAD+LLS F LD S LP ++R
Sbjct: 128 VVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDR 187
Query: 719 QILLFSAT 742
Q LLF+AT
Sbjct: 188 QTLLFTAT 195
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +3
Query: 90 KPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
+P+ IQE I L G++ + AK G+GKT A+ +P++E+
Sbjct: 29 EPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 402 IQALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
I ALI+ PTRELA+Q + L + +++ + G
Sbjct: 76 IFALILTPTRELAIQIDEQFAALGANLNLKHALIVG 111
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 54.8 bits (126), Expect = 1e-08
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Frame = +2
Query: 536 RIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPK- 712
R +N VII TPGR++DL++ Q LVLDEAD++L F+ + +IS P
Sbjct: 281 RAAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDP 340
Query: 713 ----ERQILLFSATFP 748
RQ + FSAT+P
Sbjct: 341 TRNGSRQTVFFSATWP 356
Score = 50.0 bits (114), Expect = 4e-07
Identities = 24/60 (40%), Positives = 41/60 (68%)
Frame = +3
Query: 27 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 206
+F+E + +L G+ K +++P+PIQ A+ P L+G+DV+ A+ G+GKT A+ IP L+
Sbjct: 168 QFDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQ 225
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 393 KDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
K + L+V PTRELA+QT + L + T+++ +V G
Sbjct: 234 KSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYG 272
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 52.4 bits (120), Expect = 7e-08
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +3
Query: 39 FCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVI 215
F L E+L + + G+ KP PIQ IP A G D++ +A G+GKT A+ IP+LE +
Sbjct: 127 FSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCL 185
Score = 43.2 bits (97), Expect = 4e-05
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 6/69 (8%)
Frame = +2
Query: 557 VIIATPGRMIDLMDKQ--VAKMDQCRMLVLDEADKLLS----QDFKGMLDMVISRLPKER 718
V++ATPGR+ ++++ + + LVLDEAD+LL ++ +L+++ + + +R
Sbjct: 245 VVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQR 304
Query: 719 QILLFSATF 745
Q +FSATF
Sbjct: 305 QTFIFSATF 313
Score = 33.1 bits (72), Expect = 0.043
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +3
Query: 402 IQALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
+QAL+V PTRELA Q Q + +IRVM TG
Sbjct: 193 VQALVVAPTRELAHQICQHFELIKPSPNIRVMSITG 228
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 50.8 bits (116), Expect = 2e-07
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +2
Query: 488 SCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMID-LMDKQVAKMDQCRMLVLDEADKLLS 664
SCN G + + RI + V ++I TPGR+ D L + + + Q R +VLDE D+L+
Sbjct: 250 SCN-VIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMD 308
Query: 665 QDFKGMLDMVISRLPKERQILLFSATFP 748
F+ L ++S L + I+ + P
Sbjct: 309 MGFEETLTKILSYLESQSSIIKKDLSIP 336
Score = 35.5 bits (78), Expect = 0.008
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = +3
Query: 93 PSPIQEASIPIALS--GKDVLARAKNGTGKTGAYCIPVLEQVI 215
P+ IQ +P L+ KD A+ G+GKT AY +P+++++I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLI 204
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 44.8 bits (101), Expect = 1e-05
Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +2
Query: 551 VQVIIATPGRMID-LMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRL 706
+ V+++TPGR++D + + + + R +V+DEAD+LL Q F+ +D V+ +
Sbjct: 261 IDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEI 313
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 120 PIALSGKDVLARAKNGTGKTGAYCIPVLE 206
P+ G DV A G+GKT +Y IP+++
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQ 196
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 39.1 bits (87), Expect = 7e-04
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Frame = +2
Query: 548 NVQVIIATPGRMID-LMDKQVAKMDQCRMLVLDEADKLLSQDF-KGMLDMVISRLPKERQ 721
N ++IATPGR+ D L + ++ + +LDEAD+L+ F + +L++ + + +
Sbjct: 163 NANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTR 222
Query: 722 ILLFSATFP 748
L FSAT P
Sbjct: 223 KLCFSATMP 231
Score = 29.5 bits (63), Expect = 0.53
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 402 IQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGAQT 518
I ++I+ PTRELALQ + +L T IRV G +
Sbjct: 113 IHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNS 151
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +3
Query: 102 IQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV 212
IQ +IP S +D+LA A G+GKT AY P+L+++
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKL 108
Score = 32.7 bits (71), Expect = 0.057
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +2
Query: 518 LRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVI 697
+++ ++ + + I TP R++ + ++ ++ V+DEAD+L F D ++
Sbjct: 156 IQEKAPKLREKYDMCIGTPMRLVQAIQTGLS-FEKVEFFVMDEADRLFEPGFIEQTDHIL 214
Query: 698 SRLPKERQI-LLFSATFP 748
S LFSAT P
Sbjct: 215 SACTSSNICKSLFSATIP 232
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 535 AYLSKCTSDYCHTWAY 582
A L++CT DY H+W Y
Sbjct: 3007 ALLNRCTIDYYHSWDY 3022
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -3
Query: 380 LKQFTLVISIITQ-SCFKTLFFLISSVLSHL 291
L++F L+ SI T +CF L FL+ +V SH+
Sbjct: 220 LQRFFLIKSISTYIACFAMLIFLLCNVGSHV 250
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 26.2 bits (55), Expect = 5.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 506 CSNHYTNVCVFCQFNTN 456
C NH ++C+ CQ NT+
Sbjct: 44 CRNHIMDLCIECQANTD 60
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -1
Query: 541 NTHYIISKVCAPVVTITRMSVCFASSIQICDVWSANSLVGTTIKACIVSFLGST 380
N+ S P+ ++ + ASS + V SANS T+ + +S + ST
Sbjct: 296 NSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNST 349
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 443 PNITDLY*TGKTHRH-SCNGYYRGTNLRDDIMRIYQNVQV 559
P D+Y T K+ RH S +G Y GT+ + ++Y + V
Sbjct: 142 PRCEDVY-TPKSQRHASIDGAYFGTSFPHMLFQVYPELAV 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,207,526
Number of Sequences: 5004
Number of extensions: 67776
Number of successful extensions: 253
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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