Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00301
(748 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 117 9e-27
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 117 9e-27
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 1e-15
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 8e-13
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 71 1e-12
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 70 2e-12
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 9e-12
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 3e-10
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 63 3e-10
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 62 6e-10
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 1e-09
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 1e-09
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 59 4e-09
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 4e-09
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 58 8e-09
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 58 1e-08
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 54 2e-07
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 52 5e-07
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 7e-07
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 50 3e-06
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 48 1e-05
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 46 3e-05
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 44 1e-04
SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6) 44 2e-04
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 42 4e-04
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 42 7e-04
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 42 7e-04
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 41 0.001
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 35 0.081
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 34 0.11
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 33 0.25
SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8) 31 0.99
SB_21084| Best HMM Match : DEAD (HMM E-Value=2e-22) 31 1.3
SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19) 30 1.7
SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 28 7.0
SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_3666| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 117 bits (282), Expect = 9e-27
Identities = 50/65 (76%), Positives = 62/65 (95%)
Frame = +3
Query: 15 TRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 194
T+GNEFE++CLKRELLMGIFEKG++KPSPIQE SIP+AL+G+D+LARAKNGTGKT AY +
Sbjct: 44 TKGNEFEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLV 103
Query: 195 PVLEQ 209
P+LE+
Sbjct: 104 PLLER 108
Score = 110 bits (264), Expect = 1e-24
Identities = 53/87 (60%), Positives = 68/87 (78%), Gaps = 7/87 (8%)
Frame = +2
Query: 509 GTNLRDDIMRIYQN-------VQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQ 667
GT+L+DDI+R+Y V VI+ATPGR++DLM K++A M +C+MLV+DEADKLLS
Sbjct: 152 GTSLKDDILRLYNKDIFVHVVVHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSM 211
Query: 668 DFKGMLDMVISRLPKERQILLFSATFP 748
DFK ML+ +I LP+ RQILLFSATFP
Sbjct: 212 DFKKMLEQIIKHLPENRQILLFSATFP 238
Score = 66.1 bits (154), Expect = 3e-11
Identities = 31/47 (65%), Positives = 37/47 (78%)
Frame = +3
Query: 384 DPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGAQTFE 524
D K+ IQAL++VPTRELALQTSQICIEL KH +VMVTTG + +
Sbjct: 110 DTTKNCIQALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLK 156
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 117 bits (282), Expect = 9e-27
Identities = 50/65 (76%), Positives = 62/65 (95%)
Frame = +3
Query: 15 TRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 194
T+GNEFE++CLKRELLMGIFEKG++KPSPIQE SIP+AL+G+D+LARAKNGTGKT AY +
Sbjct: 44 TKGNEFEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLV 103
Query: 195 PVLEQ 209
P+LE+
Sbjct: 104 PLLER 108
Score = 110 bits (264), Expect = 1e-24
Identities = 53/87 (60%), Positives = 68/87 (78%), Gaps = 7/87 (8%)
Frame = +2
Query: 509 GTNLRDDIMRIYQN-------VQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQ 667
GT+L+DDI+R+Y V VI+ATPGR++DLM K++A M +C+MLV+DEADKLLS
Sbjct: 152 GTSLKDDILRLYNKDIFVHVVVHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSM 211
Query: 668 DFKGMLDMVISRLPKERQILLFSATFP 748
DFK ML+ +I LP+ RQILLFSATFP
Sbjct: 212 DFKKMLEQIIKHLPENRQILLFSATFP 238
Score = 66.1 bits (154), Expect = 3e-11
Identities = 31/47 (65%), Positives = 37/47 (78%)
Frame = +3
Query: 384 DPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGAQTFE 524
D K+ IQAL++VPTRELALQTSQICIEL KH +VMVTTG + +
Sbjct: 110 DTTKNCIQALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLK 156
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 80.6 bits (190), Expect = 1e-15
Identities = 37/88 (42%), Positives = 59/88 (67%)
Frame = +2
Query: 485 HSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLS 664
H+C G GTN+R+D M++ + V V++ TPGR+ D++++ V ++ VLDEAD++LS
Sbjct: 191 HACIG---GTNVREDRMKLEEGVHVVVGTPGRVFDMINRGVLNTRDIKLFVLDEADEMLS 247
Query: 665 QDFKGMLDMVISRLPKERQILLFSATFP 748
+ FK + V +RLP Q++L SAT P
Sbjct: 248 RGFKDQIYDVFTRLPTSVQVVLLSATMP 275
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 22/83 (26%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIP----------------------IALSGKD 143
F++ LK LL GI+ G+EKPS IQ+ +I LS +D
Sbjct: 65 FDDMNLKEALLRGIYAYGFEKPSAIQQRAIRPCCQEFSPSHVCYNQLNLTKNHYVLSARD 124
Query: 144 VLARAKNGTGKTGAYCIPVLEQV 212
V+A+A++GTGKT + I +L+++
Sbjct: 125 VIAQAQSGTGKTATFAISILQEI 147
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 396 DTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
D QAL++ PTRELA Q ++ + L + ++ G
Sbjct: 158 DCCQALVLAPTRELAQQIQKVVLALGDYMHVKCHACIG 195
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 71.3 bits (167), Expect = 8e-13
Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 4/86 (4%)
Frame = +2
Query: 503 YRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGM 682
Y G ++ + + +N +++ATPGR++D+MD+ +D R LVLDEAD++L F+
Sbjct: 960 YGGADIGSQLRELDRNCHLLVATPGRLVDMMDRGRVGLDSIRFLVLDEADRMLDMGFEPQ 1019
Query: 683 LDMVISR--LPKE--RQILLFSATFP 748
+ ++ + +PK RQ L+FSATFP
Sbjct: 1020 IRRIVDQDSMPKTGIRQTLMFSATFP 1045
Score = 55.6 bits (128), Expect = 4e-08
Identities = 24/62 (38%), Positives = 42/62 (67%)
Frame = +3
Query: 27 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 206
+FE+ L LL + G++KP+P+Q+ +IPI +D++A A+ G+GKT A+ IP+L
Sbjct: 876 QFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPILS 935
Query: 207 QV 212
++
Sbjct: 936 RI 937
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/87 (34%), Positives = 56/87 (64%)
Frame = +2
Query: 488 SCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQ 667
+C + G +L +D + ++ + + TPGR+ L++++ K + RM +LDEADKLL +
Sbjct: 112 ACKVFIGGISLEED-KKALKSCHIAVGTPGRVKYLIEQKYLKTESVRMFILDEADKLLDE 170
Query: 668 DFKGMLDMVISRLPKERQILLFSATFP 748
F+ ++ + S LP+ +Q++ FSAT+P
Sbjct: 171 SFQQQINWIFSALPENKQMMAFSATYP 197
Score = 62.9 bits (146), Expect = 3e-10
Identities = 30/63 (47%), Positives = 41/63 (65%)
Frame = +3
Query: 27 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 206
+F L LL G+ E G+EKPSPIQ +IP+ G D++A+AK+GTGKT + + LE
Sbjct: 14 DFHSLLLSPTLLRGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIALE 73
Query: 207 QVI 215
VI
Sbjct: 74 NVI 76
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 390 KKDTIQALIVVPTRELALQTSQICIELAKHTD 485
+ + IQ +I+ PTRE+A+Q + + H D
Sbjct: 78 ESNCIQIIILTPTREIAVQVKDVICAIGCHYD 109
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 70.1 bits (164), Expect = 2e-12
Identities = 33/96 (34%), Positives = 56/96 (58%)
Frame = +2
Query: 461 Y*TGKTHRHSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVL 640
Y GK + Y G I + + V++ IATPGR+ID+++ + + +C LVL
Sbjct: 153 YSVGKHCKLRSTCIYGGAPKGPQIRELERGVEICIATPGRLIDMLESRKTNLRRCTYLVL 212
Query: 641 DEADKLLSQDFKGMLDMVISRLPKERQILLFSATFP 748
DEAD++L F+ + +I ++ +RQ L++SAT+P
Sbjct: 213 DEADRMLDMGFEPQIRTIIDQIRPDRQTLMWSATWP 248
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 411 LIVVPTRELALQTSQICIELAKHTDIR 491
L++ PTRELA Q ++ + KH +R
Sbjct: 136 LVLCPTRELAQQVQEVAYSVGKHCKLR 162
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 67.7 bits (158), Expect = 9e-12
Identities = 33/88 (37%), Positives = 54/88 (61%)
Frame = +2
Query: 485 HSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLS 664
H+C G GTN+ +DI ++ ++ TPGR+ D++ ++ + +MLVLDEAD++L+
Sbjct: 97 HACIG---GTNIGEDIRKLDYGQHIVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLN 153
Query: 665 QDFKGMLDMVISRLPKERQILLFSATFP 748
+ FK + V LP Q++L SAT P
Sbjct: 154 KGFKEQIYDVYRYLPPATQVVLLSATLP 181
Score = 51.2 bits (117), Expect = 9e-07
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +3
Query: 78 KGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV 212
+G+EKPS IQ+ +I L G+DV+A+A++GTGKT + I VL+ +
Sbjct: 15 EGFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAI 59
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 381 VDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
+D + QAL++ PTRELA Q ++ + L + ++ G
Sbjct: 59 IDTQLREPQALVLSPTRELANQIQKVVLALGDYMSVQCHACIG 101
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 62.9 bits (146), Expect = 3e-10
Identities = 25/62 (40%), Positives = 43/62 (69%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F E +L+ I G+ +P+P+Q+A++PI ++G+D++A A+ G+GKT AY +PVL
Sbjct: 481 FNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSGKTAAYMLPVLTS 540
Query: 210 VI 215
+I
Sbjct: 541 LI 542
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Frame = +2
Query: 503 YRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGM 682
Y G ++ ++ + ++ TPGR+ D + ++ + + L+LDEAD++L F
Sbjct: 587 YGGVSVPYQASQLERGCHFLVGTPGRLQDFVSREKIYLGSIQHLILDEADRMLDLGFGPD 646
Query: 683 LDMVISR----LPKERQILLFSATFP 748
+ +I + RQ L+FSATFP
Sbjct: 647 IHKLIEESNMTAKESRQTLMFSATFP 672
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 408 ALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
AL V PTRELA Q + + HT I+V V G
Sbjct: 555 ALCVAPTRELAKQIYIEARKFSDHTPIKVCVCYG 588
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 62.9 bits (146), Expect = 3e-10
Identities = 27/60 (45%), Positives = 42/60 (70%)
Frame = +3
Query: 27 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 206
+F +F + + L G+ + G+ P+ IQ+ IP+ALSG+DVL AK G+GKT A+ IP++E
Sbjct: 51 KFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPIIE 110
Score = 61.7 bits (143), Expect = 6e-10
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Frame = +2
Query: 470 GKTHRHSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMD--QCRMLVLD 643
G H S G +L+++ RI + +++ TPGR++ MD + D ++LVLD
Sbjct: 146 GNKHDLSAGLIIGGKDLKNEQKRIMKT-NIVVCTPGRLLQHMD-ETPNFDCTSLQILVLD 203
Query: 644 EADKLLSQDFKGMLDMVISRLPKERQILLFSAT 742
EAD++L F L+ +I LP ERQ LL+SAT
Sbjct: 204 EADRILDMGFAPTLNAIIENLPSERQTLLYSAT 236
Score = 32.3 bits (70), Expect = 0.43
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 396 DTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGAQ 515
D + AL++ PTRELA QT ++ +++ D+ + G +
Sbjct: 121 DGLGALVISPTRELAYQTFEVLVKIGNKHDLSAGLIIGGK 160
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 61.7 bits (143), Expect = 6e-10
Identities = 27/66 (40%), Positives = 41/66 (62%)
Frame = +2
Query: 551 VQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQILL 730
VQVI+ATPGRM++++ +Q + V+DE D +L F+ + ++ RL RQ +L
Sbjct: 256 VQVIVATPGRMVEIISRQAVDLTHVIGCVVDEVDTMLQLGFEQQVQQILERLSNRRQTML 315
Query: 731 FSATFP 748
FSAT P
Sbjct: 316 FSATIP 321
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 27 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGK 176
EF L + G+ P+PIQ +P+ LSG+DV+ A G+GK
Sbjct: 197 EFFHCSFNESLSKNLSNHGYHSPTPIQMQVLPVLLSGRDVMVCASTGSGK 246
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 60.9 bits (141), Expect = 1e-09
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 11/103 (10%)
Frame = +2
Query: 473 KTHRHSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLM---DKQVAKMDQCRMLVLD 643
K + C Y GT + + I + + ++I+ TPGRMID++ + +V +C LVLD
Sbjct: 169 KPNNLRCVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTYLVLD 228
Query: 644 EADKLLSQDFKGMLD--------MVISRLPKERQILLFSATFP 748
EAD++ F+ + +I + +RQ ++FSATFP
Sbjct: 229 EADRMFDMGFEPQITKIRYPKVMRIIDCIRPDRQTVMFSATFP 271
Score = 34.7 bits (76), Expect = 0.081
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = +3
Query: 75 EKGWEKPSPIQEASIPIALSGKDVLA 152
+ +EKP+PIQ +IP+ +SG+D++A
Sbjct: 122 KNSYEKPTPIQAQAIPVIMSGRDMIA 147
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 408 ALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
A+++ PTRELA+Q + C + K ++R + G
Sbjct: 147 AIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYG 180
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 60.9 bits (141), Expect = 1e-09
Identities = 26/64 (40%), Positives = 44/64 (68%)
Frame = +3
Query: 24 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 203
N FEE L L + + ++KP+P+Q+ SIPI ++G+DV+A A+ G+GKT A+ +PV+
Sbjct: 711 NSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKTAAFLLPVM 770
Query: 204 EQVI 215
++
Sbjct: 771 TSMM 774
Score = 58.4 bits (135), Expect = 6e-09
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +2
Query: 503 YRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGM 682
Y G ++ + ++ +++ TPGR+ D ++K + + L+LDEAD++L F+
Sbjct: 823 YGGVSVSHQLRQLQSGCNLLVGTPGRLTDFIEKGKVSLKGLQFLILDEADRMLDMGFEPA 882
Query: 683 LDMVISRL----PKERQILLFSATFP 748
+ ++ + ERQ L+FSATFP
Sbjct: 883 IRRIVESMGMPDKSERQTLMFSATFP 908
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Frame = +2
Query: 473 KTHRHSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMID-LMDKQVAKMDQCRMLVLDEA 649
K H + G N + + R+ + V ++IATPGR++D L + Q + LV+DEA
Sbjct: 669 KHHNFTYGIIMGGVNRKAEAERLQKGVNLLIATPGRLLDHLQNTQGFLYKNLQCLVIDEA 728
Query: 650 DKLLSQDFKGMLDMVISRLPKERQILLFSAT 742
D++L F+ + +I LP +RQ +LFSAT
Sbjct: 729 DRILEIGFEEEMRQIIRILPSKRQTVLFSAT 759
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = +3
Query: 45 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 206
+ + L GI + G+ + IQ SI L G+D+L AK G+GKT A+ +PV+E
Sbjct: 579 VSEKTLQGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVVE 632
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 411 LIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
+I+ PTREL+LQT + +L KH + + G
Sbjct: 648 IIISPTRELSLQTYGVARDLLKHHNFTYGIIMG 680
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 58.8 bits (136), Expect = 4e-09
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F +F LK ELL I + G+E PS +Q IP A+ G D++ +AK+G GKT + + L+Q
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATLQQ 108
Query: 210 V 212
+
Sbjct: 109 L 109
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 500 YYRGTNLRDDIMRIYQNV-QVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQ 667
++ G N++ D + N +++ TPGR++ L ++ + + +LDE DK+L Q
Sbjct: 150 FFGGINIKKDQQTLKTNCPHIVVGTPGRILALTREKTLNLKHAKHFILDECDKMLEQ 206
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 58.8 bits (136), Expect = 4e-09
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F +F LK ELL I + G+E PS +Q IP A+ G D++ +AK+G GKT + + L+Q
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATLQQ 108
Query: 210 V 212
+
Sbjct: 109 L 109
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 500 YYRGTNLRDDIMRIYQNV-QVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQ 667
++ G N++ D + N +++ TPGR++ L ++ + + +LDE DK+L Q
Sbjct: 150 FFGGINIKKDQQTLKTNCPHIVVGTPGRILALTREKTLNLKHAKHFILDECDKMLEQ 206
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 58.0 bits (134), Expect = 8e-09
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +3
Query: 75 EKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVI 215
E G+ P+PIQ ++IP+AL GKDV A A GTGKT A+ +P+LE+++
Sbjct: 27 ELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLL 73
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 57.6 bits (133), Expect = 1e-08
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMID-LMDKQVAKMDQCRMLVLDEADKLLSQDFKGML 685
G ++ + + V+IATPGR+ D + + + + LVLDEAD+LL F L
Sbjct: 112 GLDMMKQALSLANKPHVVIATPGRLADHIKSTDTLNLKKIQFLVLDEADRLLDPSFGDDL 171
Query: 686 DMVISRLPKERQILLFSAT 742
++ +P++RQ LLFSAT
Sbjct: 172 KVIFDAVPEKRQTLLFSAT 190
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +3
Query: 9 ADTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAY 188
AD F L + L+ G +KP+ IQ +P L G+D + AK G+GKT A+
Sbjct: 2 ADGTTCSFAGLGLNKWLVSQCVAMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAF 61
Query: 189 CIPVLEQV 212
+P+L+++
Sbjct: 62 ALPILQKL 69
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 53.6 bits (123), Expect = 2e-07
Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDV--LARAKNGTGKTGAYCIPVL 203
FEE L L G+++ G+ KPS IQE ++P+ L+ V +A++++GTGKT A+ + +L
Sbjct: 105 FEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVNMIAQSQSGTGKTAAFVLTML 164
Query: 204 EQV 212
+V
Sbjct: 165 SRV 167
Score = 37.9 bits (84), Expect = 0.009
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +2
Query: 557 VIIATPGRMIDLMDKQVA-KMDQCRMLVLDEADKLLS-QDFKGMLDMVISRLPKERQILL 730
+II TPG ++D + K + + + VLDEAD +++ Q + + L K+ Q+LL
Sbjct: 224 IIIGTPGTLLDWIRKSKCFEPRKVSVFVLDEADIMIALQGHQDQSIRIHKSLHKDCQVLL 283
Query: 731 FSATF 745
FSAT+
Sbjct: 284 FSATY 288
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 52.0 bits (119), Expect = 5e-07
Identities = 23/52 (44%), Positives = 36/52 (69%)
Frame = +3
Query: 24 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKT 179
N FEE L L + + ++KP+P+Q+ SIPI ++G+DV+A A+ G+GKT
Sbjct: 134 NSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKT 185
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 51.6 bits (118), Expect = 7e-07
Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = +3
Query: 27 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALS-GKDVLARAKNGTGKTGAYCIPVL 203
E+E + ++L + ++G+ KP+PIQ SIP AL +D++ A+ G+GKT A+ IP++
Sbjct: 131 EWEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPII 190
Query: 204 EQVICY 221
+ + Y
Sbjct: 191 QHIEAY 196
Score = 36.3 bits (80), Expect = 0.026
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 408 ALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
ALI+ PTRELALQ ++ AK+T ++V G
Sbjct: 221 ALIMAPTRELALQVKDHLVKAAKYTSVKVAAIVG 254
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 551 VQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQ 667
V V++ + +K V+ + R LV+DEAD+++ Q
Sbjct: 316 VVVVVVVVDTSVTNQEKHVSNIQLLRYLVIDEADRMVEQ 354
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Frame = +3
Query: 60 LMGIFEK-GWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 203
++ I +K G++ P+PIQ +IPI L +D++ A+ G+GKT A+ IP+L
Sbjct: 112 ILEIVDKLGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFAIPLL 160
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 408 ALIVVPTRELALQTSQICIELAKHTDIRVMVTTGAQTFEMI*CVFIKMYK*LLPHLGV 581
ALI+ PTRELA Q + ++ + IR + G MI F + +L HL V
Sbjct: 181 ALILAPTRELAQQIEEEILKFGRPLGIRTVSVIGGAD-RMIDMGFEPEVQKILEHLPV 237
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/62 (35%), Positives = 38/62 (61%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F F +++ I + + +P+ IQ ++PIALSG+D++ AK G+GKT A+ P L
Sbjct: 519 FAHFGFDEQMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVH 578
Query: 210 VI 215
++
Sbjct: 579 IM 580
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +2
Query: 470 GKTHRHSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEA 649
GK + + G N + + + ++++ATPGR+ID + + + + LV DEA
Sbjct: 614 GKAYNIHVVAVFGGGNKYEQSKALQEGAEIVVATPGRLIDHVKAKATNLHRVTYLVFDEA 673
Query: 650 DKLLSQDF 673
D++ F
Sbjct: 674 DRMFDMGF 681
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/57 (36%), Positives = 36/57 (63%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPV 200
F + L EL + +K ++ P+PIQ S+ +SG+D++ A+ G+GKT AY +P+
Sbjct: 74 FHDLNLPPELSTYLAKKNFQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPL 130
Score = 41.1 bits (92), Expect = 0.001
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Frame = +2
Query: 437 GTPNITDLY*TGK-THRHSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAK 613
G N + +Y T + T R+ G + + + + V++ATPGR++DL
Sbjct: 179 GPSNQSVIYDTQQFTARYKAVAVCGGVPVSTQTIALREGADVVVATPGRLLDLY------ 232
Query: 614 MDQCRMLVLDEADKLLSQDFKGMLDMVI---SRLPKERQILLFSATFP 748
+ LV+DE D++L + L ++ + + RQ LL+SAT P
Sbjct: 233 --KITYLVMDEPDRMLGMGMEEQLRKIVGLATGTSRARQTLLWSATLP 278
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Frame = +2
Query: 539 IYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKE- 715
I + V++ TPGR++D M + + + + +VLDE D++L F ++ V++ E
Sbjct: 192 INSGLDVLVGTPGRILDFMRQGTLDLSKLKHVVLDEVDRMLDMGFAESVEEVLAASYAED 251
Query: 716 ----RQILLFSATFP 748
Q LLFSAT P
Sbjct: 252 REDKPQTLLFSATLP 266
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/65 (27%), Positives = 40/65 (61%)
Frame = +3
Query: 18 RGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIP 197
R +F +F + ++ + + ++G PIQ ++ G+DV+ +A+ GTGKT ++ +P
Sbjct: 71 REGDFSKFRISQKTIDNLEDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALP 130
Query: 198 VLEQV 212
++E++
Sbjct: 131 LVEKL 135
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/60 (33%), Positives = 36/60 (60%)
Frame = +3
Query: 27 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 206
EF F + +L+ + + G KP PIQE ++P S K +L +++ GTGK+ + +P ++
Sbjct: 161 EFSNFGVHPKLVEKLKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSVQ 220
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 554 QVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLL 661
+++I TP R+ +++ + + + +V+DE DK L
Sbjct: 279 RIVIGTPKRLWEIVQEHEHLFQRTKRIVIDEVDKTL 314
>SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6)
Length = 127
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +2
Query: 629 MLVLDEADKLLSQDFKGMLDMVISRLPKERQILLFSATF 745
+LVLDEAD++L F + V+++LP +RQ LLFSATF
Sbjct: 6 ILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATF 44
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/41 (41%), Positives = 30/41 (73%)
Frame = +2
Query: 485 HSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQV 607
H+C G GTN+R+D M++ + V V++ TPGR+ D++++ V
Sbjct: 6 HACIG---GTNVREDRMKLEEGVHVVVGTPGRVFDMINRGV 43
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMID-LMDKQVAKMDQCRMLVLDEADKLLSQDFK 676
G ++ + + + +IIATPGR+ID L + + + + LV+DEAD++L+ DF+
Sbjct: 69 GIDMMSQALMLAKKPHIIIATPGRLIDHLENTKGFSLRTLKYLVMDEADRILNMDFE 125
Score = 34.7 bits (76), Expect = 0.081
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = +3
Query: 138 KDVLARAKNGTGKTGAYCIPVLEQVI 215
KDV+ A+ G+GKTGA+ +P+L+ ++
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALL 27
Score = 31.1 bits (67), Expect = 0.99
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 408 ALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
ALI+ PTRELA Q S+ C L ++ V G
Sbjct: 35 ALILTPTRELAFQISEQCEALGSGIGVKCAVIVG 68
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = +2
Query: 605 VAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQILLFSATFP 748
V + R LVLDEAD+++ F+ + + S +RQ LLFSAT P
Sbjct: 11 VGNVSPYRYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMP 58
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = +2
Query: 605 VAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQILLFSATFP 748
V + R LVLDEAD+++ F+ + + S +RQ LLFSAT P
Sbjct: 11 VGNVSPYRYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMP 58
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 41.5 bits (93), Expect = 7e-04
Identities = 15/33 (45%), Positives = 26/33 (78%)
Frame = +3
Query: 114 SIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV 212
++P+ + GKDV+A A+ G+GKT A+ IP+ E++
Sbjct: 311 TLPLVMDGKDVVAMARTGSGKTAAFLIPMFEKL 343
Score = 36.7 bits (81), Expect = 0.020
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +3
Query: 402 IQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGAQT 518
I+ALI+ PTRELALQT + EL + T ++ V G +
Sbjct: 352 IRALILSPTRELALQTQKFIKELGRFTGLKSSVILGGDS 390
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 560 IIATPGRMIDLMDKQVAKMDQCRMLVLDEADK 655
++ATPGR + ++ + K+ +V DEAD+
Sbjct: 391 VVATPGRFLHVVMEMELKLSSVEYVVFDEADR 422
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +2
Query: 551 VQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPK 712
V ++ TPG++ D + + Q + +LDEAD LL+Q ++ + +++PK
Sbjct: 136 VDIVTGTPGKLNDFITTDKISLHQVKFFILDEADGLLAQGNNDLIMKIYNKIPK 189
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 34.7 bits (76), Expect = 0.081
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 93 PSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV 212
P+ +Q+ P L G+DV A G+GK AY +P++ Q+
Sbjct: 210 PTSLQKHMWPSLLRGRDVAGVAIEGSGKRLAYLLPIIHQI 249
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 524 DDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKL 658
D I+ + +V++ATP + ++ + +D+ +V D+AD L
Sbjct: 306 DRIVPLINGCEVLVATPPCFLRMLKRCYTSLDRLCHVVFDDADML 350
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +3
Query: 387 PKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGA 512
PKK +A++V PTRELA Q + LAK R+ V T A
Sbjct: 201 PKKSGFRAVVVSPTRELAQQIYREFCHLAKGCAFRIHVLTKA 242
Score = 31.5 bits (68), Expect = 0.75
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 557 VIIATPGRMIDLMDKQVA--KMDQCRMLVLDEADKLLSQDFKGMLDMV 694
+++ TP R++ L+ ++ ++ L+LDEADKL + G + +
Sbjct: 259 ILVTTPNRLVHLLTQEPPGIELHNVEWLILDEADKLFEEGKDGFREQI 306
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 518 LRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGM 682
+RDD+ V +++ATPG ++ K LV+DEAD + FK +
Sbjct: 498 MRDDLE---SPVDLLVATPGTLLKYRQKDRLFFSDLTHLVIDEADTMFDASFKSL 549
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +3
Query: 45 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV 212
L+ ++L + +P+ IQ +IP + V+ A+ G+GKT AY P++ ++
Sbjct: 385 LRDDVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAPLVHRL 440
>SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +3
Query: 24 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIA-LSGKDVLARAK 161
+E+E + ++L + ++G+ KP+PIQ SIP A L +D++ A+
Sbjct: 72 SEWEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAE 118
>SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)
Length = 210
Score = 31.1 bits (67), Expect = 0.99
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +2
Query: 572 PGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQ 721
P +D +DK + +MLVLDEAD++L++ FK + V LP Q
Sbjct: 21 PPLEVDGIDKLDTR--SIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 68
>SB_21084| Best HMM Match : DEAD (HMM E-Value=2e-22)
Length = 202
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 390 KKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGA 512
K + Q+ ++ PT LA Q ELAK DI++++ TG+
Sbjct: 102 KDNDFQSCLMAPTEILATQHFNGISELAKDLDIKIVLLTGS 142
>SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19)
Length = 304
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 99 PIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 203
P+Q +I L+ KD L G GKT Y IP L
Sbjct: 142 PMQRQAIDTLLAEKDSLILLPTGAGKTICYAIPAL 176
>SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 548 FDKYALYHLEGLCPCSNHYTNVCVFCQ 468
F+ L + G CP + Y N C FC+
Sbjct: 54 FETRPLVRMRGCCPVNKRYRNSCQFCR 80
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 485 HSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRM 583
H+C G GTN+ +DI ++ ++ TPGR+
Sbjct: 35 HACIG---GTNIGEDIRKLDYGQHIVSGTPGRV 64
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 405 QALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
QAL++ PTRELA Q ++ + L + ++ G
Sbjct: 5 QALVLSPTRELANQIQKVVLALGDYMSVQCHACIG 39
>SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -2
Query: 381 PKTIH-SCNFNNYTVLF*NIVFFNQFCFVSLIKSEGESKYFIILKNIKMKTIVTYNKLPV 205
PK H S N T L + F +FC + ++ +KY + I +K+I+ Y L
Sbjct: 375 PKETHGSLPVYNLTKLIFILTFNGKFCIDAHYTNKYNNKYRYTQRRILLKSILLYQALKK 434
Query: 204 PKL 196
KL
Sbjct: 435 KKL 437
>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1584
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -1
Query: 181 PVLPVPFLALASTSFPLRAIGIEAS*IGDGFSHPFS-KI-PINNSRFKQNSSNSLP 20
P+LP L ++ +PLR+ + G ++ + +I P NSR QNS NSLP
Sbjct: 480 PILPTKRLLAVNSQYPLRSQAPQKQ-PGYFYNLDYQGRINPATNSRQTQNSLNSLP 534
>SB_3666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 843
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 130 RAIGIEAS*IGDGFSHPFSKIPINNSRFKQNS 35
RA+G+ ++ +G G S PF+ I +NN R N+
Sbjct: 476 RAVGLASADLG-GASDPFAVIEVNNQRLVTNT 506
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,340,349
Number of Sequences: 59808
Number of extensions: 492195
Number of successful extensions: 1103
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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