Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00301
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 117 7e-27
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 117 7e-27
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 116 1e-26
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 116 1e-26
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 115 4e-26
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 75 7e-14
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 73 2e-13
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 73 2e-13
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 73 3e-13
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 73 3e-13
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 71 6e-13
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 70 1e-12
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 70 1e-12
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 70 2e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 70 2e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 70 2e-12
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 69 3e-12
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 69 3e-12
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 69 4e-12
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 69 4e-12
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 69 4e-12
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 67 1e-11
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 67 1e-11
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 67 1e-11
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 67 1e-11
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 66 2e-11
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 66 2e-11
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 65 4e-11
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 65 4e-11
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 65 5e-11
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 65 5e-11
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 64 7e-11
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 64 9e-11
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 64 9e-11
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 64 1e-10
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 64 1e-10
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 64 1e-10
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 63 2e-10
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 63 2e-10
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 63 2e-10
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 62 4e-10
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 62 4e-10
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 61 7e-10
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 61 7e-10
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 61 7e-10
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 60 1e-09
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 60 1e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 60 2e-09
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 59 3e-09
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 59 3e-09
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 58 6e-09
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 53 2e-07
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 52 4e-07
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 50 1e-06
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 50 2e-06
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 50 2e-06
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 49 3e-06
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 49 3e-06
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 49 4e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 48 5e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 43 2e-04
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 42 6e-04
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 40 0.002
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.003
At2g28600.1 68415.m03476 expressed protein 33 0.15
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 33 0.27
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 29 2.5
At2g29680.2 68415.m03608 cell division control protein CDC6, put... 29 4.3
At2g29680.1 68415.m03607 cell division control protein CDC6, put... 29 4.3
At3g56200.1 68416.m06246 amino acid transporter family protein l... 28 7.6
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 117 bits (282), Expect = 7e-27
Identities = 51/66 (77%), Positives = 63/66 (95%)
Frame = +3
Query: 15 TRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 194
T+GNEFE++ LKRELLMGI+EKG+E+PSPIQE SIPIAL+G+D+LARAKNGTGKT A+CI
Sbjct: 128 TKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCI 187
Query: 195 PVLEQV 212
PVLE++
Sbjct: 188 PVLEKI 193
Score = 102 bits (245), Expect = 2e-22
Identities = 46/80 (57%), Positives = 64/80 (80%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLD 688
GT+L+DDIMR+YQ V +++ TPGR++DL K V + C +LV+DEADKLLSQ+F+ ++
Sbjct: 236 GTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVE 295
Query: 689 MVISRLPKERQILLFSATFP 748
+IS LP+ RQIL+FSATFP
Sbjct: 296 HLISFLPESRQILMFSATFP 315
Score = 64.5 bits (150), Expect = 7e-11
Identities = 29/48 (60%), Positives = 37/48 (77%)
Frame = +3
Query: 381 VDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGAQTFE 524
+D + IQA+I+VPTRELALQTSQ+C EL KH I+VMVTTG + +
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLK 240
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 117 bits (282), Expect = 7e-27
Identities = 51/66 (77%), Positives = 63/66 (95%)
Frame = +3
Query: 15 TRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 194
T+GNEFE++ LKRELLMGI+EKG+E+PSPIQE SIPIAL+G+D+LARAKNGTGKT A+CI
Sbjct: 128 TKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCI 187
Query: 195 PVLEQV 212
PVLE++
Sbjct: 188 PVLEKI 193
Score = 102 bits (245), Expect = 2e-22
Identities = 46/80 (57%), Positives = 64/80 (80%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLD 688
GT+L+DDIMR+YQ V +++ TPGR++DL K V + C +LV+DEADKLLSQ+F+ ++
Sbjct: 236 GTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVE 295
Query: 689 MVISRLPKERQILLFSATFP 748
+IS LP+ RQIL+FSATFP
Sbjct: 296 HLISFLPESRQILMFSATFP 315
Score = 64.5 bits (150), Expect = 7e-11
Identities = 29/48 (60%), Positives = 37/48 (77%)
Frame = +3
Query: 381 VDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGAQTFE 524
+D + IQA+I+VPTRELALQTSQ+C EL KH I+VMVTTG + +
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLK 240
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 116 bits (280), Expect = 1e-26
Identities = 51/66 (77%), Positives = 62/66 (93%)
Frame = +3
Query: 15 TRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 194
T+GNEFE++ LKR+LL GI+EKG+EKPSPIQE SIPIAL+G D+LARAKNGTGKTGA+CI
Sbjct: 121 TKGNEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCI 180
Query: 195 PVLEQV 212
PVLE++
Sbjct: 181 PVLEKI 186
Score = 99.1 bits (236), Expect = 3e-21
Identities = 45/80 (56%), Positives = 61/80 (76%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLD 688
GT+LRDDIMR++Q V +++ TPGR++DL K V + C MLV+DEADKLLS +F+ L+
Sbjct: 229 GTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLE 288
Query: 689 MVISRLPKERQILLFSATFP 748
+I LP+ RQ L+FSATFP
Sbjct: 289 ELIQFLPQNRQFLMFSATFP 308
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/43 (67%), Positives = 38/43 (88%)
Frame = +3
Query: 381 VDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
+DP + IQA+I+VPTRELALQTSQ+C EL+K+ +I+VMVTTG
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTG 228
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 116 bits (280), Expect = 1e-26
Identities = 51/66 (77%), Positives = 62/66 (93%)
Frame = +3
Query: 15 TRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 194
T+GNEFE++ LKR+LL GI+EKG+EKPSPIQE SIPIAL+G D+LARAKNGTGKTGA+CI
Sbjct: 121 TKGNEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCI 180
Query: 195 PVLEQV 212
PVLE++
Sbjct: 181 PVLEKI 186
Score = 99.1 bits (236), Expect = 3e-21
Identities = 45/80 (56%), Positives = 61/80 (76%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLD 688
GT+LRDDIMR++Q V +++ TPGR++DL K V + C MLV+DEADKLLS +F+ L+
Sbjct: 229 GTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLE 288
Query: 689 MVISRLPKERQILLFSATFP 748
+I LP+ RQ L+FSATFP
Sbjct: 289 ELIQFLPQNRQFLMFSATFP 308
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/43 (67%), Positives = 38/43 (88%)
Frame = +3
Query: 381 VDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
+DP + IQA+I+VPTRELALQTSQ+C EL+K+ +I+VMVTTG
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTG 228
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 115 bits (276), Expect = 4e-26
Identities = 50/66 (75%), Positives = 61/66 (92%)
Frame = +3
Query: 15 TRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 194
T+GNEFE++ LKR+LL GI+EKG+EKPSPIQE SIPIAL+G D+LARAKNGTGKTGA+CI
Sbjct: 151 TKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCI 210
Query: 195 PVLEQV 212
P LE++
Sbjct: 211 PTLEKI 216
Score = 101 bits (242), Expect = 5e-22
Identities = 46/80 (57%), Positives = 62/80 (77%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLD 688
GT+LRDDIMR+YQ V +++ TPGR++DL K V + C MLV+DEADKLLS +F+ ++
Sbjct: 259 GTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIE 318
Query: 689 MVISRLPKERQILLFSATFP 748
+I LP+ RQIL+FSATFP
Sbjct: 319 ELIQFLPESRQILMFSATFP 338
Score = 64.9 bits (151), Expect = 5e-11
Identities = 29/43 (67%), Positives = 37/43 (86%)
Frame = +3
Query: 381 VDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
+DP+ + IQA+I+VPTRELALQTSQ+C EL+K+ I VMVTTG
Sbjct: 216 IDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTG 258
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 74.5 bits (175), Expect = 7e-14
Identities = 35/88 (39%), Positives = 56/88 (63%)
Frame = +2
Query: 485 HSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLS 664
H+C G GT++R+D + V V++ TPGR+ D++ +Q + D +M VLDEAD++LS
Sbjct: 139 HACVG---GTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLS 195
Query: 665 QDFKGMLDMVISRLPKERQILLFSATFP 748
+ FK + + LP + Q+ +FSAT P
Sbjct: 196 RGFKDQIYDIFQLLPPKIQVGVFSATMP 223
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/61 (44%), Positives = 39/61 (63%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F+ L+ LL GI+ G+EKPS IQ+ I G DV+ +A++GTGKT +C VL+Q
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 100
Query: 210 V 212
+
Sbjct: 101 L 101
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 405 QALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
QAL++ PTRELA Q ++ L + ++V G
Sbjct: 109 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVG 143
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 72.9 bits (171), Expect = 2e-13
Identities = 29/93 (31%), Positives = 56/93 (60%)
Frame = +2
Query: 470 GKTHRHSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEA 649
G++ R SC Y G + + + +++ATPGR+ D+++ ++ Q +LVLDEA
Sbjct: 531 GRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEA 590
Query: 650 DKLLSQDFKGMLDMVISRLPKERQILLFSATFP 748
D++L F+ + +++ +P RQ L+++AT+P
Sbjct: 591 DRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWP 623
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/56 (44%), Positives = 34/56 (60%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIP 197
FE L E+L + G+ P+PIQ + PIAL +D++A AK G+GKT Y IP
Sbjct: 437 FESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIP 492
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 72.9 bits (171), Expect = 2e-13
Identities = 33/80 (41%), Positives = 52/80 (65%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLD 688
GT++R+D + V V++ TPGR+ DL+ +Q + D +M VLDEAD++LS+ FK +
Sbjct: 146 GTSVREDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIY 205
Query: 689 MVISRLPKERQILLFSATFP 748
+ LP + Q+ +FSAT P
Sbjct: 206 DIFQLLPSKVQVGVFSATMP 225
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/63 (42%), Positives = 41/63 (65%)
Frame = +3
Query: 24 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 203
+ F+ L+ +LL GI+ G+EKPS IQ+ I G DV+ +A++GTGKT +C VL
Sbjct: 41 DSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVL 100
Query: 204 EQV 212
+Q+
Sbjct: 101 QQL 103
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 405 QALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
QAL++ PTRELA Q ++ L + ++ G
Sbjct: 111 QALVLAPTRELAQQIEKVMRALGDYLGVKAQACVG 145
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/93 (33%), Positives = 57/93 (61%)
Frame = +2
Query: 470 GKTHRHSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEA 649
GK+ + SC Y G + I + V +++ATPGR+ D+++ + + Q LVLDEA
Sbjct: 325 GKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEA 384
Query: 650 DKLLSQDFKGMLDMVISRLPKERQILLFSATFP 748
D++L F+ + +++ +P +RQ L+++AT+P
Sbjct: 385 DRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWP 417
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/43 (48%), Positives = 29/43 (67%)
Frame = +3
Query: 69 IFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIP 197
++ G+ PSPIQ S PIA+ +D++A AK G+GKT Y IP
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIP 286
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 72.5 bits (170), Expect = 3e-13
Identities = 35/88 (39%), Positives = 56/88 (63%)
Frame = +2
Query: 485 HSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLS 664
H+C G GT++R+D + V V++ TPGR+ D++ +Q + D +M VLDEAD++LS
Sbjct: 139 HACVG---GTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLS 195
Query: 665 QDFKGMLDMVISRLPKERQILLFSATFP 748
+ FK + + LP + Q+ +FSAT P
Sbjct: 196 RGFKDQIYDIFQLLPPKIQVGVFSATMP 223
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/61 (44%), Positives = 39/61 (63%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F+ L+ LL GI+ G+EKPS IQ+ I G DV+ +A++GTGKT +C VL+Q
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 100
Query: 210 V 212
+
Sbjct: 101 L 101
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 405 QALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
QAL++ PTRELA Q ++ L + ++V G
Sbjct: 109 QALVLAPTRELAQQIEKVMRALGDYQGVKVHACVG 143
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 71.3 bits (167), Expect = 6e-13
Identities = 31/80 (38%), Positives = 50/80 (62%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLD 688
G ++R + + + V +++ATPGR+ D++ K+ +D CR+L LDEAD+L+ F+ +
Sbjct: 216 GVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIR 275
Query: 689 MVISRLPKERQILLFSATFP 748
V +RQ LLFSAT P
Sbjct: 276 HVFDHFKSQRQTLLFSATMP 295
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = +3
Query: 57 LLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 203
LL + +KG P+PIQ +P+ LSG+D++ A G+GKT + +P++
Sbjct: 108 LLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMI 156
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 70.1 bits (164), Expect = 1e-12
Identities = 31/80 (38%), Positives = 49/80 (61%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLD 688
G ++R + + + V +++ATPGR+ D++ K+ +D CR L LDEAD+L+ F+ +
Sbjct: 265 GIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIR 324
Query: 689 MVISRLPKERQILLFSATFP 748
V +RQ LLFSAT P
Sbjct: 325 EVFDHFKSQRQTLLFSATMP 344
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/58 (34%), Positives = 37/58 (63%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 203
F++ R +L + EKG +P+PIQ +P+ L+G+D++ A G+GKT + +P++
Sbjct: 148 FKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMI 205
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 70.1 bits (164), Expect = 1e-12
Identities = 30/82 (36%), Positives = 53/82 (64%)
Frame = +2
Query: 503 YRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGM 682
Y GT + + ++ V V + TPGR+IDLM + + + + +VLDEAD++L F
Sbjct: 211 YGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAED 270
Query: 683 LDMVISRLPKERQILLFSATFP 748
+++++ +LP++RQ ++FSAT P
Sbjct: 271 VEIILEKLPEKRQSMMFSATMP 292
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/67 (38%), Positives = 43/67 (64%)
Frame = +3
Query: 21 GNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPV 200
G E + E++ + KG EK PIQ+A + A+ G+D++ RA+ GTGKT A+ IP+
Sbjct: 103 GLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPI 162
Query: 201 LEQVICY 221
++++I Y
Sbjct: 163 IDKIIKY 169
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 69.7 bits (163), Expect = 2e-12
Identities = 29/93 (31%), Positives = 55/93 (59%)
Frame = +2
Query: 470 GKTHRHSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEA 649
G++ R SC Y G + + + +++ATPGR+ D+++ + + Q LVLDEA
Sbjct: 254 GRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEA 313
Query: 650 DKLLSQDFKGMLDMVISRLPKERQILLFSATFP 748
D++L F+ + ++ +P +RQ L+++AT+P
Sbjct: 314 DRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWP 346
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/56 (46%), Positives = 34/56 (60%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIP 197
FE ELL + G+ P+PIQ S PIA+ G+D++A AK G+GKT Y IP
Sbjct: 160 FEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIP 215
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 69.7 bits (163), Expect = 2e-12
Identities = 29/93 (31%), Positives = 55/93 (59%)
Frame = +2
Query: 470 GKTHRHSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEA 649
G++ R SC Y G + + + +++ATPGR+ D+++ + + Q LVLDEA
Sbjct: 254 GRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEA 313
Query: 650 DKLLSQDFKGMLDMVISRLPKERQILLFSATFP 748
D++L F+ + ++ +P +RQ L+++AT+P
Sbjct: 314 DRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWP 346
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/56 (46%), Positives = 34/56 (60%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIP 197
FE ELL + G+ P+PIQ S PIA+ G+D++A AK G+GKT Y IP
Sbjct: 160 FEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIP 215
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 69.7 bits (163), Expect = 2e-12
Identities = 29/93 (31%), Positives = 55/93 (59%)
Frame = +2
Query: 470 GKTHRHSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEA 649
G++ R SC Y G + + + +++ATPGR+ D+++ + + Q LVLDEA
Sbjct: 254 GRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEA 313
Query: 650 DKLLSQDFKGMLDMVISRLPKERQILLFSATFP 748
D++L F+ + ++ +P +RQ L+++AT+P
Sbjct: 314 DRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWP 346
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/56 (46%), Positives = 34/56 (60%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIP 197
FE ELL + G+ P+PIQ S PIA+ G+D++A AK G+GKT Y IP
Sbjct: 160 FEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIP 215
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 69.3 bits (162), Expect = 3e-12
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Frame = +2
Query: 470 GKTHRHSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVA-KMDQCRMLVLDE 646
GK H+ S G D + +++ PGR++ MD+ + Q ++L+LDE
Sbjct: 167 GKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDE 226
Query: 647 ADKLLSQDFKGMLDMVISRLPKERQILLFSAT 742
AD++L FKG LD +IS+LPK RQ LLFSAT
Sbjct: 227 ADRVLDSAFKGQLDPIISQLPKHRQTLLFSAT 258
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/62 (33%), Positives = 39/62 (62%)
Frame = +3
Query: 27 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 206
+F + + + G+ + + + +Q A+IP AL G+D+L A+ G+GKT A+ IP+LE
Sbjct: 72 KFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILE 131
Query: 207 QV 212
++
Sbjct: 132 KL 133
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 68.9 bits (161), Expect = 3e-12
Identities = 29/82 (35%), Positives = 51/82 (62%)
Frame = +2
Query: 503 YRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGM 682
Y GT + + + + V + TPGR+IDLM + + + + +VLDEAD++L F
Sbjct: 223 YGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAED 282
Query: 683 LDMVISRLPKERQILLFSATFP 748
+++++ +LP +RQ ++FSAT P
Sbjct: 283 VEIILQKLPAKRQSMMFSATMP 304
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/54 (40%), Positives = 39/54 (72%)
Frame = +3
Query: 54 ELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVI 215
E++ + +G EK PIQ+A + A+ G+D++ RA+ GTGKT A+ IP+++++I
Sbjct: 126 EIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 68.5 bits (160), Expect = 4e-12
Identities = 31/82 (37%), Positives = 53/82 (64%)
Frame = +2
Query: 503 YRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGM 682
Y G I + + V+++IATPGR+ID+++ Q + + LVLDEAD++L F+
Sbjct: 273 YGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQ 332
Query: 683 LDMVISRLPKERQILLFSATFP 748
+ ++S++ +RQ LL+SAT+P
Sbjct: 333 IRKIVSQIRPDRQTLLWSATWP 354
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F++ +L I + G+ +P+PIQ P+AL G+D++ A+ G+GKT AY +P L
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226
Query: 210 V 212
V
Sbjct: 227 V 227
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 68.5 bits (160), Expect = 4e-12
Identities = 31/82 (37%), Positives = 53/82 (64%)
Frame = +2
Query: 503 YRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGM 682
Y G I + + V+++IATPGR+ID+++ Q + + LVLDEAD++L F+
Sbjct: 273 YGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQ 332
Query: 683 LDMVISRLPKERQILLFSATFP 748
+ ++S++ +RQ LL+SAT+P
Sbjct: 333 IRKIVSQIRPDRQTLLWSATWP 354
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F++ +L I + G+ +P+PIQ P+AL G+D++ A+ G+GKT AY +P L
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226
Query: 210 V 212
V
Sbjct: 227 V 227
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 68.5 bits (160), Expect = 4e-12
Identities = 31/82 (37%), Positives = 52/82 (63%)
Frame = +2
Query: 503 YRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGM 682
Y G + + + V V++ TPGR+IDL++ + K+ + LVLDEAD++L+ F+
Sbjct: 213 YGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEA 272
Query: 683 LDMVISRLPKERQILLFSATFP 748
++ ++ LP +RQ +LFSAT P
Sbjct: 273 VESILENLPTKRQSMLFSATMP 294
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/56 (41%), Positives = 37/56 (66%)
Frame = +3
Query: 45 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV 212
L + L + ++G PIQ A + AL G+D++ARAK GTGKT A+ IP+++++
Sbjct: 109 LPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRL 164
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 67.3 bits (157), Expect = 1e-11
Identities = 31/61 (50%), Positives = 45/61 (73%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
FEE L L+ + +KG EKP+ IQ+++IP L GKDV+ARAK G+GKT AY +P+L++
Sbjct: 48 FEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQK 107
Query: 210 V 212
+
Sbjct: 108 L 108
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +2
Query: 608 AKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQILLFSAT 742
A + +LVLDEAD LLS ++ L V S +P+ Q LL SAT
Sbjct: 196 AVSESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSAT 240
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 66.9 bits (156), Expect = 1e-11
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Frame = +2
Query: 503 YRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGM 682
Y GT + I + + V +++ATPGR+ DL+++ + R L LDEAD++L F+
Sbjct: 259 YGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQ 318
Query: 683 LDMVISRL----PKERQILLFSATFP 748
+ ++ ++ P RQ +LFSATFP
Sbjct: 319 IRKIVQQMDMPPPGVRQTMLFSATFP 344
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/64 (37%), Positives = 40/64 (62%)
Frame = +3
Query: 24 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 203
N F E L L + I + KP+P+Q +IPI +G+D++A A+ G+GKT A+C P++
Sbjct: 146 NTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPII 205
Query: 204 EQVI 215
++
Sbjct: 206 SGIM 209
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Frame = +2
Query: 503 YRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGM 682
Y GT + + + + V +++ATPGR+ DL+++ M R L LDEAD++L F+
Sbjct: 272 YGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQ 331
Query: 683 LDMVISRL---PK-ERQILLFSATFP 748
+ ++ ++ P+ RQ LLFSATFP
Sbjct: 332 IRKIVEQMDMPPRGVRQTLLFSATFP 357
Score = 57.6 bits (133), Expect = 8e-09
Identities = 25/64 (39%), Positives = 40/64 (62%)
Frame = +3
Query: 24 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 203
N F E L L + I + KP+P+Q +IPI L G+D++A A+ G+GKT A+C P++
Sbjct: 159 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPII 218
Query: 204 EQVI 215
++
Sbjct: 219 SGIM 222
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 66.9 bits (156), Expect = 1e-11
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Frame = +2
Query: 491 CNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCR---MLVLDEADKLL 661
C Y G+ + I + + ++++ TPGRMID++ K+ R LV+DEAD++
Sbjct: 633 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMF 692
Query: 662 SQDFKGMLDMVISRLPKERQILLFSATFP 748
F+ + +I + ERQ +LFSATFP
Sbjct: 693 DMGFEPQITRIIQNIRPERQTVLFSATFP 721
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +3
Query: 45 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV 212
L ++L + + +EKP PIQ ++PI +SG+D + AK G+GKT + +P+L +
Sbjct: 536 LTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI 591
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/82 (36%), Positives = 50/82 (60%)
Frame = +2
Query: 503 YRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGM 682
Y G++ I I V ++I TPGR+ DL++ V ++ +VLDEAD++L F+
Sbjct: 226 YGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEP 285
Query: 683 LDMVISRLPKERQILLFSATFP 748
+ ++S K RQ+++FSAT+P
Sbjct: 286 VRFILSNTNKVRQMVMFSATWP 307
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +3
Query: 78 KGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVI 215
K +EKPSPIQ + P L G+D++ AK G+GKT A+ IP + V+
Sbjct: 132 KTFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVL 177
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/65 (43%), Positives = 43/65 (66%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F E ++ EL+ GW+ PS IQ ++P AL GKDV+ A+ G+GKTGA+ IP+L+
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70
Query: 210 VICYM 224
++ Y+
Sbjct: 71 LLEYV 75
Score = 61.3 bits (142), Expect = 7e-10
Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +2
Query: 557 VIIATPGRMIDLM-DKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQILLF 733
VI+ATPGR+ D M D + + + LVLDEAD+LL++DF+ L+ ++ +P ER+ LF
Sbjct: 142 VIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLF 201
Query: 734 SAT 742
SAT
Sbjct: 202 SAT 204
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/88 (35%), Positives = 54/88 (61%)
Frame = +2
Query: 485 HSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLS 664
H+C G G ++ +DI ++ V V+ TPGR+ D++ ++ + ++L+LDE+D++LS
Sbjct: 135 HACIG---GNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLS 191
Query: 665 QDFKGMLDMVISRLPKERQILLFSATFP 748
+ FK + V LP + Q+ L SAT P
Sbjct: 192 RGFKDQIYDVYRYLPPDLQVCLVSATLP 219
Score = 58.8 bits (136), Expect = 4e-09
Identities = 25/61 (40%), Positives = 42/61 (68%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F + +K ++L G++E G+EKPS IQ+ ++ L G+DV+A+A++GTGKT + V +
Sbjct: 37 FNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQV 96
Query: 210 V 212
V
Sbjct: 97 V 97
Score = 34.7 bits (76), Expect = 0.066
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 381 VDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGAQT 518
VD +QALI+ PTRELA QT + + H +I+ G +
Sbjct: 97 VDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNS 142
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 65.3 bits (152), Expect = 4e-11
Identities = 29/82 (35%), Positives = 49/82 (59%)
Frame = +2
Query: 503 YRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGM 682
Y G + + + V+++IATPGR+ID+M+ + + LVLDEAD++L F
Sbjct: 207 YGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQ 266
Query: 683 LDMVISRLPKERQILLFSATFP 748
+ ++S + +RQ L +SAT+P
Sbjct: 267 IRKIVSHIRPDRQTLYWSATWP 288
Score = 44.4 bits (100), Expect = 8e-05
Identities = 18/52 (34%), Positives = 34/52 (65%)
Frame = +3
Query: 57 LLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV 212
+L + + G+ +P+PIQ P+A+ G+D++ A+ G+GKT +Y +P + V
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHV 161
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 64.9 bits (151), Expect = 5e-11
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Frame = +2
Query: 473 KTHRHSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMID-LMDKQVAKMDQCRMLVLDEA 649
K H + + G N R + RI ++IATPGR++D L + + + LV+DEA
Sbjct: 186 KHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEA 245
Query: 650 DKLLSQDFKGMLDMVISRLPKERQILLFSAT 742
D++L ++F+ ++ ++ LPK RQ LFSAT
Sbjct: 246 DRILEENFEEDMNKILKILPKTRQTALFSAT 276
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/59 (40%), Positives = 34/59 (57%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 206
F+ L + + I E G++ + IQ SI L GKDVL A+ G+GKT A+ IP +E
Sbjct: 91 FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 411 LIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
+++ PTRELA+QT + EL KH V + G
Sbjct: 165 IVICPTRELAIQTKNVAEELLKHHSQTVSMVIG 197
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 64.9 bits (151), Expect = 5e-11
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Frame = +2
Query: 491 CNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRM---LVLDEADKLL 661
C Y G+ + I + + ++++ TPGRMID++ K+ R LV+DEAD++
Sbjct: 500 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMF 559
Query: 662 SQDFKGMLDMVISRLPKERQILLFSATFP 748
F+ + ++ + +RQ +LFSATFP
Sbjct: 560 DMGFEPQITRIVQNIRPDRQTVLFSATFP 588
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +3
Query: 45 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV 212
L ++L + + +EKP PIQ ++PI +SG+D + AK G+GKT + +P+L +
Sbjct: 403 LTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI 458
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 64.5 bits (150), Expect = 7e-11
Identities = 31/62 (50%), Positives = 43/62 (69%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F++F L L I + G+E + +QEA++PI L GKDVLA+AK GTGKT A+ +P +E
Sbjct: 384 FDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEA 443
Query: 210 VI 215
VI
Sbjct: 444 VI 445
Score = 61.7 bits (143), Expect = 5e-10
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Frame = +2
Query: 509 GTNLRDDIMRIYQN-VQVIIATPGRMIDLMDKQ---VAKMDQCRMLVLDEADKLLSQDFK 676
GT L + R+ N Q+++ATPGR+ D ++ ++ ++LVLDEAD LL F+
Sbjct: 496 GTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFR 555
Query: 677 GMLDMVISRLPKERQILLFSATFP 748
++ +I+ +PK+RQ LFSAT P
Sbjct: 556 RDIERIIAAVPKQRQTFLFSATVP 579
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 384 DPKKDTIQALIVVPTRELALQTSQICIELAK-HTDIRVMVTTG 509
D ++ I L+V PTRELA Q + L K H I V V G
Sbjct: 453 DSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIG 495
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 64.1 bits (149), Expect = 9e-11
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Frame = +2
Query: 503 YRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGM 682
Y GT + + + + +++ATPGR+ DL+++ M R L LDEAD++L F+
Sbjct: 264 YGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQ 323
Query: 683 LDMVISRL---PK-ERQILLFSATFP 748
+ ++ ++ P+ RQ +LFSATFP
Sbjct: 324 IRKIVEQMDMPPRGVRQTMLFSATFP 349
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/64 (34%), Positives = 40/64 (62%)
Frame = +3
Query: 24 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 203
N F + L L + I + +P+P+Q +IPI L+ +D++A A+ G+GKT A+C P++
Sbjct: 151 NTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPII 210
Query: 204 EQVI 215
++
Sbjct: 211 SGIM 214
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 64.1 bits (149), Expect = 9e-11
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Frame = +2
Query: 503 YRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGM 682
Y GT + + + + +++ATPGR+ DL+++ M R L LDEAD++L F+
Sbjct: 264 YGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQ 323
Query: 683 LDMVISRL---PK-ERQILLFSATFP 748
+ ++ ++ P+ RQ +LFSATFP
Sbjct: 324 IRKIVEQMDMPPRGVRQTMLFSATFP 349
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/64 (34%), Positives = 40/64 (62%)
Frame = +3
Query: 24 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 203
N F + L L + I + +P+P+Q +IPI L+ +D++A A+ G+GKT A+C P++
Sbjct: 151 NTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPII 210
Query: 204 EQVI 215
++
Sbjct: 211 SGIM 214
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 63.7 bits (148), Expect = 1e-10
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Frame = +2
Query: 509 GTNLRDDIMRIYQN-VQVIIATPGRMIDLMDKQ---VAKMDQCRMLVLDEADKLLSQDFK 676
GT L + R+ N Q+++ATPGR+ D ++ ++ ++LVLDEAD LL F+
Sbjct: 168 GTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFR 227
Query: 677 GMLDMVISRLPKERQILLFSATFP 748
++ +IS +PKERQ LFSAT P
Sbjct: 228 KDIERIISAVPKERQTFLFSATVP 251
Score = 61.3 bits (142), Expect = 7e-10
Identities = 29/62 (46%), Positives = 42/62 (67%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F+ + L L I + G+E + +QEA++PI L GKDVLA+AK GTGKT A+ +P +E
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 115
Query: 210 VI 215
V+
Sbjct: 116 VV 117
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 384 DPKKDTIQALIVVPTRELALQTSQICIELAK-HTDIRVMVTTG 509
D K+ I AL++ PTRELA Q + L K H I V V G
Sbjct: 125 DNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIG 167
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/62 (46%), Positives = 44/62 (70%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F++F L L GI + G++ + +QEA++P+ L GKD+LA+AK GTGKT A+ +P +E
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 210 VI 215
VI
Sbjct: 142 VI 143
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Frame = +2
Query: 509 GTNLRDDIMRIYQN-VQVIIATPGRMIDLMDKQ---VAKMDQCRMLVLDEADKLLSQDFK 676
GT L + R+ ++ Q+++ATPGR+ D +D ++ ++LVLDEAD LL F+
Sbjct: 194 GTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFR 253
Query: 677 GMLDMVISRLPKERQILLFSAT 742
++ +I+ +PK+RQ LFSAT
Sbjct: 254 REIERIIAAVPKQRQTFLFSAT 275
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 384 DPKKDTIQALIVVPTRELALQ-TSQICIELAKHTDIRVMVTTG 509
D + I L+V PTRELA Q ++ I L H I V V G
Sbjct: 151 DNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIG 193
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/82 (32%), Positives = 48/82 (58%)
Frame = +2
Query: 503 YRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGM 682
Y G + + + ++++ATPGR+ID++ + M + LVLDEAD++ F+
Sbjct: 336 YGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQ 395
Query: 683 LDMVISRLPKERQILLFSATFP 748
+ ++ ++ +RQ LLFSAT P
Sbjct: 396 VRSIVGQIRPDRQTLLFSATMP 417
Score = 56.0 bits (129), Expect = 2e-08
Identities = 23/62 (37%), Positives = 42/62 (67%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
FE+ +++ I ++ +EKP+ IQ ++PI LSG+DV+ AK G+GKT A+ +P++
Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 289
Query: 210 VI 215
++
Sbjct: 290 IM 291
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Frame = +2
Query: 545 QNVQVIIATPGRMIDLMDK-QVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQ 721
+ V+I TPGR+ D+M++ ++ +L+LDEAD+LL F+ ++ +ISRLPK+R+
Sbjct: 141 EGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRR 200
Query: 722 ILLFSAT 742
LFSAT
Sbjct: 201 TGLFSAT 207
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/68 (33%), Positives = 41/68 (60%)
Frame = +3
Query: 3 ARADTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTG 182
A +TR ++ E L +++ + + +E +P+Q A+IP+ S KDV A G+GKT
Sbjct: 10 ALTETRFSDLEP-PLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTL 68
Query: 183 AYCIPVLE 206
A+ +P++E
Sbjct: 69 AFVVPLVE 76
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/62 (46%), Positives = 42/62 (67%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F E L R LL G++KP+PIQ A IP+AL+G+D+ A A G+GKT A+ +P LE+
Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLER 228
Query: 210 VI 215
++
Sbjct: 229 LL 230
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +2
Query: 491 CNGYYRGTNLRDDIMRIYQNVQVIIATPGRMID-LMDKQVAKMDQCRMLVLDEADKLLSQ 667
C G ++R+ + + +++ATPGRMID L + +D +L+LDEAD+LL
Sbjct: 269 CGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQT 328
Query: 668 DFKGMLDMVISRLPKERQILLFSAT 742
F + ++ PK RQ +LFSAT
Sbjct: 329 GFATEITELVRLCPKRRQTMLFSAT 353
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 405 QALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
+ LI+ PTRELA+Q + LA+ TDI+ + G
Sbjct: 240 RVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVG 274
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 4/84 (4%)
Frame = +2
Query: 509 GTNLRDDIMRIYQN-VQVIIATPGRMIDLMDKQ---VAKMDQCRMLVLDEADKLLSQDFK 676
GT R D R+ Q++IATPGR++D ++ + +++ ++ ++DEAD LL FK
Sbjct: 490 GTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFK 549
Query: 677 GMLDMVISRLPKERQILLFSATFP 748
++ +I LP++RQ LLFSAT P
Sbjct: 550 RDVEKIIDCLPRQRQSLLFSATIP 573
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F+E C+ L + G K + +Q+A++ L GKD L +AK GTGK+ A+ +P +E
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 210 VI 215
V+
Sbjct: 437 VL 438
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 62.1 bits (144), Expect = 4e-10
Identities = 30/78 (38%), Positives = 46/78 (58%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLD 688
G + + RI Q V++II TPGR++DL+ K ++D VLDE D +L + F+ +
Sbjct: 223 GDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVM 282
Query: 689 MVISRLPKERQILLFSAT 742
+ L + Q+LLFSAT
Sbjct: 283 QIFQAL-SQPQVLLFSAT 299
Score = 54.4 bits (125), Expect = 8e-08
Identities = 23/59 (38%), Positives = 39/59 (66%)
Frame = +3
Query: 45 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVICY 221
L +LL+ + G++ P+PIQ +IP AL+GK +LA A G+GKT ++ +P++ + Y
Sbjct: 117 LPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTY 175
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 62.1 bits (144), Expect = 4e-10
Identities = 30/78 (38%), Positives = 46/78 (58%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLD 688
G + + RI Q V++II TPGR++DL+ K ++D VLDE D +L + F+ +
Sbjct: 86 GDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVM 145
Query: 689 MVISRLPKERQILLFSAT 742
+ L + Q+LLFSAT
Sbjct: 146 QIFQAL-SQPQVLLFSAT 162
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +3
Query: 114 SIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVICY 221
+IP AL+GK +LA A G+GKT ++ +P++ + Y
Sbjct: 3 AIPAALTGKSLLASADTGSGKTASFLVPIISRCTTY 38
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 61.3 bits (142), Expect = 7e-10
Identities = 27/61 (44%), Positives = 39/61 (63%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F +F LK ELL I + G+E PS +Q IP A+ G DV+ +AK+G GKT + + L+Q
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 210 V 212
+
Sbjct: 108 I 108
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Frame = +2
Query: 500 YYRGTNLR--DDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLL-SQD 670
+Y G N++ D+++ + +++ TPGR++ L ++ + R +LDE DK+L S D
Sbjct: 149 FYGGVNIKIHKDLLK-NECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLD 207
Query: 671 FKGMLDMVISRLPKERQILLFSAT 742
+ + + P ++Q+++FSAT
Sbjct: 208 MRRDVQEIFKMTPHDKQVMMFSAT 231
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 61.3 bits (142), Expect = 7e-10
Identities = 27/61 (44%), Positives = 39/61 (63%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F +F LK ELL I + G+E PS +Q IP A+ G DV+ +AK+G GKT + + L+Q
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 210 V 212
+
Sbjct: 108 I 108
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Frame = +2
Query: 500 YYRGTNLR--DDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLL-SQD 670
+Y G N++ D+++ + +++ TPGR++ L ++ + R +LDE DK+L S D
Sbjct: 149 FYGGVNIKIHKDLLK-NECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLD 207
Query: 671 FKGMLDMVISRLPKERQILLFSAT 742
+ + + P ++Q+++FSAT
Sbjct: 208 MRRDVQEIFKMTPHDKQVMMFSAT 231
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 61.3 bits (142), Expect = 7e-10
Identities = 30/88 (34%), Positives = 52/88 (59%)
Frame = +2
Query: 485 HSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLS 664
H+C G G ++ +DI ++ + V + TPGR+ D++ + + ++LVLDE+D++LS
Sbjct: 122 HACIG---GKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLS 178
Query: 665 QDFKGMLDMVISRLPKERQILLFSATFP 748
+ K + V LP + Q+ L SAT P
Sbjct: 179 KGLKDQIYDVYRALPHDIQVCLISATLP 206
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/61 (37%), Positives = 42/61 (68%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F++ + ++L G+++ G++KPS IQ+ ++ L G+DV+A+A++GTGKT I V +
Sbjct: 24 FDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQI 83
Query: 210 V 212
V
Sbjct: 84 V 84
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 402 IQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGAQT 518
+Q L++ P+RELA QT + + HT+I+ G ++
Sbjct: 91 VQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKS 129
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 60.5 bits (140), Expect = 1e-09
Identities = 23/67 (34%), Positives = 46/67 (68%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLD 688
G ++ + ++I Q +++IATPGR+ID ++++ A ++QC +VLDEAD+++ F+ +
Sbjct: 426 GQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVA 485
Query: 689 MVISRLP 709
V+ +P
Sbjct: 486 GVLDAMP 492
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/61 (44%), Positives = 41/61 (67%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
+EE L ELL + G++KPSPIQ A+IP+ L +DV+ A+ G+GKT A+ +P+L
Sbjct: 315 WEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAY 374
Query: 210 V 212
+
Sbjct: 375 I 375
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 408 ALIVVPTRELALQTSQICIELAKHTDIRVMVTTGAQTFE 524
A+++ PTRELA Q + ++ A + RV G Q+ E
Sbjct: 392 AVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIE 430
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/84 (36%), Positives = 53/84 (63%), Gaps = 4/84 (4%)
Frame = +2
Query: 509 GTNLRDDIMRIYQN-VQVIIATPGRMIDLMDKQ---VAKMDQCRMLVLDEADKLLSQDFK 676
GT + D R+ Q++IATPGR++D ++ + +++ ++ ++DEAD LL F+
Sbjct: 443 GTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFR 502
Query: 677 GMLDMVISRLPKERQILLFSATFP 748
++ +I LP++RQ LLFSAT P
Sbjct: 503 RDVEKIIDCLPRQRQSLLFSATIP 526
Score = 50.8 bits (116), Expect = 9e-07
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F+E C+ L + G K + +Q+A++ L GKD L +AK GTGK+ A+ +P +E
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 210 VI 215
V+
Sbjct: 390 VL 391
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/61 (44%), Positives = 42/61 (68%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
FE L + I +KG++ P+PIQ ++P+ LSG DV+A A+ G+GKT A+ IP+LE+
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 210 V 212
+
Sbjct: 90 L 90
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMIDLMDK-QVAKMDQCRMLVLDEADKLLSQDFKGML 685
G ++ D + + VIIATPGR++ L+ + + +V DEAD L F L
Sbjct: 135 GDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQL 194
Query: 686 DMVISRLPKERQILLFSATFP 748
++++L + RQ LLFSAT P
Sbjct: 195 HQILTQLSENRQTLLFSATLP 215
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +3
Query: 402 IQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGAQTFE 524
++ALI+ PTR+LA QT + EL K TD+RV + G + E
Sbjct: 99 VRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSME 139
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Frame = +2
Query: 545 QNVQVIIATPGRMIDLMDK-QVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQ 721
+ ++I TPGR+ D+M + + +L+LDEAD+LL F+ ++ +ISRLPK+R+
Sbjct: 141 EGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRR 200
Query: 722 ILLFSAT 742
LFSAT
Sbjct: 201 TGLFSAT 207
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +3
Query: 45 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 206
L +++ + G+E +P+Q +IP S KDV+ A G+GKT A+ +P +E
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIE 76
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Frame = +2
Query: 545 QNVQVIIATPGRMIDLMDK-QVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQ 721
+ ++I TPGR+ D+M + + +L+LDEAD+LL F+ ++ +ISRLPK+R+
Sbjct: 134 EGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRR 193
Query: 722 ILLFSAT 742
LFSAT
Sbjct: 194 TGLFSAT 200
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +3
Query: 45 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 206
L +++ + G+E +P+Q +IP S KDV+ A G+GKT A+ +P +E
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIE 77
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 58.0 bits (134), Expect = 6e-09
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Frame = +2
Query: 473 KTHRHSCNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKM-DQCRMLVLDEA 649
K H + G + + + + V +++ATPGR++D ++ + + LV+DEA
Sbjct: 251 KYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEA 310
Query: 650 DKLLSQDFKGMLDMVISRLPKERQILLFSAT 742
D++L Q+F+ L +++ LPK RQ LFSAT
Sbjct: 311 DRILEQNFEEDLKKILNLLPKTRQTSLFSAT 341
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 206
FE L I E G+ + + IQ +IP + G+DVL A+ G+GKT A+ IP +E
Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVE 214
Score = 27.5 bits (58), Expect = 10.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 411 LIVVPTRELALQTSQICIELAKH 479
L++ PTRELA+Q+ + EL K+
Sbjct: 230 LVICPTRELAIQSYGVAKELLKY 252
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +2
Query: 491 CNGYYRGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQV---AKMDQCRMLVLDEADKLL 661
C+ G ++ M + ++I TPGR+ L++ + + LVLDEAD++L
Sbjct: 157 CSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVL 216
Query: 662 SQDFKGMLDMVISRLPKERQILLFSAT 742
F+ L + LPK RQ LLFSAT
Sbjct: 217 DVGFQDELRTIFQCLPKSRQTLLFSAT 243
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/66 (36%), Positives = 37/66 (56%)
Frame = +3
Query: 15 TRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 194
T FE L + E G KP+P+Q +P L+G+DVL A+ G+GKT A+ +
Sbjct: 55 TSATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFAL 114
Query: 195 PVLEQV 212
P+L ++
Sbjct: 115 PILHRL 120
Score = 27.5 bits (58), Expect = 10.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 408 ALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
AL+V PTRELA Q ++ L ++R V G
Sbjct: 129 ALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVG 162
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQD-FKGML 685
G R + + Q V V+IATPGR LM++ + + R +LDE D L D F+ L
Sbjct: 489 GFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAAL 548
Query: 686 DMVISRLPKERQILLFSATFP 748
+I+ P Q L +AT P
Sbjct: 549 QNLINSSPVTAQYLFVTATLP 569
Score = 41.1 bits (92), Expect = 8e-04
Identities = 16/61 (26%), Positives = 36/61 (59%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
F E +++ + E+ +++P+ IQ + + GK + ++G+GKT AY +PV+++
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 210 V 212
+
Sbjct: 436 L 436
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/61 (34%), Positives = 37/61 (60%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 209
FEE L LL + +G+ P+ +Q A++P + G D + ++ G+GKT AY +P+L +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 210 V 212
+
Sbjct: 172 I 172
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +2
Query: 470 GKTHRHSCNGYYRGTN-LRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDE 646
G HR G N +R + +++ TPGR+ ++ CR LVLDE
Sbjct: 216 GPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDE 275
Query: 647 ADKLLSQDFKGMLDMVISRLPK 712
D+LLS +F+ + ++ + K
Sbjct: 276 VDELLSFNFREDIHRILEHVGK 297
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/49 (44%), Positives = 34/49 (69%)
Frame = +3
Query: 57 LLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 203
+L + E G+++P+PIQ +IPI LSG++ A A G+GKT A+ P+L
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPML 200
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 557 VIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQI-LLF 733
V+I+TP R+ + + + + LVLDE+DKL Q +D V+ I LF
Sbjct: 261 VLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLF 320
Query: 734 SATFP 748
SAT P
Sbjct: 321 SATLP 325
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 387 PKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTT 506
P D I+A+I+ P RELA QT++ +L K ++ + + T
Sbjct: 206 PSTDGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMT 245
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +3
Query: 45 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV 212
L + + + + G+++PS Q IP LSGKDV+ A+ G+GKT Y P+++Q+
Sbjct: 87 LSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQL 142
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Frame = +3
Query: 15 TRGNEFEEFCLKRELLMGIF-EKGWEKPSPIQEASIPIALSG--KDVLARAKNGTGKTGA 185
T + FE+ L EL+ G++ E +EKPS IQ S+P+ ++ K ++A+A NG+GKT
Sbjct: 88 TSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTC 147
Query: 186 YCIPVLEQV 212
+ + +L +V
Sbjct: 148 FVLGMLSRV 156
Score = 38.7 bits (86), Expect = 0.004
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Frame = +2
Query: 548 NVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQD------FKGMLDMVISRLP 709
+ V+I TPG + M + ++ ++LV DEAD +L+ D K M D I R+
Sbjct: 214 SAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKD--IGRVN 271
Query: 710 KERQILLFSATF 745
Q+LLFSATF
Sbjct: 272 PNFQVLLFSATF 283
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 381 VDPKKDTIQALIVVPTRELALQTSQICIELAKHTDI 488
VDP QAL + PTRELA Q ++ ++ K T I
Sbjct: 156 VDPTLREPQALCICPTRELANQNMEVLQKMGKFTGI 191
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/44 (47%), Positives = 30/44 (68%)
Frame = +3
Query: 81 GWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV 212
G+E P+ +Q +IP+ LSG+DVL A GTGKT AY P++ +
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHL 92
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 497 GYYRGTNLR-DDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQ-CRMLVLDEADKLLSQD 670
GY G + + R+ + + ++IATPGR++D + + + + R ++ DEAD +L
Sbjct: 137 GYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELG 196
Query: 671 FKGMLDMVISRL 706
+ ++ +I L
Sbjct: 197 YGKEIEQIIKLL 208
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Frame = +2
Query: 500 YYRGTNLR--DDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLL-SQD 670
+Y G N++ D+++ + +++ TPGR++ L ++ + R +LDE DK+L S D
Sbjct: 66 FYGGVNIKIHKDLLK-NECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLD 124
Query: 671 FKGMLDMVISRLPKERQILLFSAT 742
+ + + P ++Q+++FSAT
Sbjct: 125 MRRDVQEIFKMTPHDKQVMMFSAT 148
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 141 DVLARAKNGTGKTGAYCIPVLEQV 212
DV+ +AK+G GKT + + L+Q+
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQI 25
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Frame = +2
Query: 536 RIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKE 715
++ + V +++ TPGR+ D +++Q + VLDEAD++L F +++++ ++
Sbjct: 220 KLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDS 279
Query: 716 R--QILLFSATFP 748
Q LLFSAT P
Sbjct: 280 TKVQTLLFSATLP 292
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/64 (32%), Positives = 35/64 (54%)
Frame = +3
Query: 24 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 203
N +F + L + G E PIQ ++ + L G D++ RA+ G GKT A+ +P+L
Sbjct: 96 NAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPIL 155
Query: 204 EQVI 215
E ++
Sbjct: 156 ESLV 159
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/54 (35%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Frame = +3
Query: 57 LLMGIFEKGWEKPSPIQEASIPIAL-SGKDVLARAKNGTGKTGAYCIPVLEQVI 215
L+ I+ +++P+ IQ+A +A GKDV+ A+ G+GKT A+ +P+L++++
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLL 254
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Frame = +2
Query: 536 RIYQNVQVIIATPGRMIDLM---DKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRL 706
R+ + ++++ATPGR+ +LM +K + ++ VLDEAD+++ + L ++ L
Sbjct: 325 RLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLL 384
Query: 707 P 709
P
Sbjct: 385 P 385
Score = 34.3 bits (75), Expect = 0.087
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +3
Query: 402 IQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGAQTFE 524
++ALI+ PTRELALQ ++ AK+ ++V+ G E
Sbjct: 280 LRALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSE 320
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +3
Query: 30 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 206
F+E L E++ + E E P+ IQ IP + K V+ + G+GKT AY +P+++
Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ 172
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 509 GTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDF 673
G+ +R + + +++ TPGR++ +++ LVLDEAD + + F
Sbjct: 226 GSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGF 280
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/38 (42%), Positives = 29/38 (76%)
Frame = +3
Query: 381 VDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRV 494
++P++ ++QA+IVVPTREL +Q +++ LA ++I V
Sbjct: 138 INPQRSSVQAVIVVPTRELGMQVTKVARMLAAKSEIDV 175
Score = 34.3 bits (75), Expect = 0.087
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 75 EKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV 212
E G+ P+ IQ ++P +G+D + A+ G+GKT Y + + +
Sbjct: 93 EIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLI 138
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +2
Query: 557 VIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLL-SQDFKGMLDMVISRLPK--ERQIL 727
+++AT + +++K + ++D R+LV+DE D L S G + +++ +RQ +
Sbjct: 203 ILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTV 262
Query: 728 LFSATFP 748
SA+ P
Sbjct: 263 FASASIP 269
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = +2
Query: 524 DDIMRIYQN-VQVIIATPGRMIDLMDKQVA-KMDQCRMLVLDEADKLLSQDFKGMLDMVI 697
DD+ + ++ V +++ATPGR++D ++ ++ R LV+DE D+LL + ++ L V+
Sbjct: 156 DDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVL 215
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 402 IQALIVVPTRELALQTSQICIELAKHTDIRVMVTTG 509
++AL+V+PTR+LALQ + +A + V G
Sbjct: 95 LRALVVLPTRDLALQVKDVFDAIAPAVGLSVGSAVG 130
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/64 (21%), Positives = 34/64 (53%)
Frame = +2
Query: 554 QVIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQILLF 733
+ I+ATP R+++++ + + +LV+DE L S + + + + + Q ++F
Sbjct: 248 EFIVATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVF 307
Query: 734 SATF 745
+ +F
Sbjct: 308 NNSF 311
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +2
Query: 557 VIIATPGRMIDLMDKQVAKMDQCRMLVLDEADKLL-SQDFKGMLDMVISRLPK--ERQIL 727
+++AT + +++K + ++D R+LV+DE D L S G + +++ +RQ +
Sbjct: 46 ILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTV 105
Query: 728 LFSATFP 748
SA+ P
Sbjct: 106 FASASIP 112
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 105 QEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV 212
Q +I AL+GK+V +GK+ Y +PV E++
Sbjct: 398 QAEAISAALAGKNVAVATMTSSGKSLCYNVPVFEEL 433
>At2g29680.2 68415.m03608 cell division control protein CDC6,
putative almost identical to DNA replication protein
CDC6 GI:18056480 from [Arabidopsis thaliana]; identical
to cDNA CDC6 protein (2g29680 gene) GI:18056479
Length = 508
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 620 QCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQILLFSA 739
+C+++ +D LS+ FK + I LP+ +QI++ SA
Sbjct: 382 ECQVVKMDHMIAALSKTFKSPIVDTIQSLPQHQQIIVCSA 421
>At2g29680.1 68415.m03607 cell division control protein CDC6,
putative almost identical to DNA replication protein
CDC6 GI:18056480 from [Arabidopsis thaliana]; identical
to cDNA CDC6 protein (2g29680 gene) GI:18056479
Length = 539
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 620 QCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQILLFSA 739
+C+++ +D LS+ FK + I LP+ +QI++ SA
Sbjct: 413 ECQVVKMDHMIAALSKTFKSPIVDTIQSLPQHQQIIVCSA 452
>At3g56200.1 68416.m06246 amino acid transporter family protein low
similarity to N system amino acids transporter NAT-1
[Mus musculus] GI:7406950; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 435
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 502 VTITRMSVCFASSIQICDVWSANSLVGTTIKACI 401
+T+ + CF S+I + D+W +G+TI I
Sbjct: 352 LTLALLICCFLSAIAVPDIWYFFQFMGSTITVSI 385
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,337,976
Number of Sequences: 28952
Number of extensions: 339622
Number of successful extensions: 973
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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