Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00300
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    28   1.2  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    27   2.2  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   3.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   6.6  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   6.6  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    25   8.7  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 461 GKVTYNGSEKPDVTFTSATKTWPILYP 541
           G V+   +E PD+ F++A   WP  YP
Sbjct: 211 GTVSKTANEGPDIYFSNADLIWPNEYP 237


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 313 DLKAFRVVGDGGHIVRRHVWNPLRYIVMTTAPPRPKLC 200
           D   F  +G G  I+  H+   ++Y  +   PP  KLC
Sbjct: 144 DFILFNTLGIGAFILHDHLLGIIKYNYIHVPPPSGKLC 181


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = +3

Query: 63  YLEILSLSAVSVTQGVDYTTSGSIRIQSSGSPVVYR--EVP--RARIALQHNLGLGGAVV 230
           Y+E  S+SA + T  + Y+ S +  +  S  PVV    E+P   +   +   +  G    
Sbjct: 741 YIETPSVSATTTTTTIGYSGSLTTTLTGSSGPVVTNTVEIPYGNSSYIIPTTIVTGTVTT 800

Query: 231 ITMYRKGFQT*RRTMWPPSPT 293
           +T    G +T   T+ P   T
Sbjct: 801 VTTGYTGTETSTVTVIPTGTT 821


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 333 LKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSS 443
           + R  KPT TT S   A +T   + T  T+P    SS
Sbjct: 345 ISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSS 381


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +2

Query: 293 NPEGFKVFKYMKILEEAMQTDQDNLIEKVRGIYGFKVRNGPDGAEG 430
           NP G K FK + +  E +   Q   +    GI        P GAEG
Sbjct: 38  NPNGEKKFKEISLAYEVLSDPQRRKLYDQYGITEGNAAPPPPGAEG 83


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 680 SRSADLSWSRTSHEIVIRKGY 742
           S+  +++WS+TS+EIV   G+
Sbjct: 336 SQVCNMAWSKTSNEIVTTHGF 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,768
Number of Sequences: 5004
Number of extensions: 58977
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)