Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00300
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0855 - 32271631-32271712,32271823-32271922,32272012-322720... 45 7e-05
01_03_0268 + 14436631-14436756,14436866-14436929,14437001-144371... 43 2e-04
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 29 3.0
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 29 3.9
03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798 29 5.2
06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833... 28 6.9
03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238 28 9.1
03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684 28 9.1
>02_05_0855 -
32271631-32271712,32271823-32271922,32272012-32272072,
32272169-32272294
Length = 122
Score = 44.8 bits (101), Expect = 7e-05
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +1
Query: 511 SDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLT 621
+D+D + SGKLNPQ AF GK+KI+G++ A K T
Sbjct: 76 TDDDFLAISSGKLNPQMAFIMGKLKIKGSISAAQKFT 112
>01_03_0268 +
14436631-14436756,14436866-14436929,14437001-14437100,
14437187-14437478
Length = 193
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +1
Query: 511 SDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLT 621
+D+D + SGKLNPQ F GK+KI+G++ A K T
Sbjct: 77 TDDDFLAISSGKLNPQMVFIMGKLKIKGSISAAQKFT 113
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 375 FSIKLSWSVCMASSRIFMYLKTLKPSGLSATAATLFGVTFGILYG 241
F + S S+C+ + I +Y T + S L A + +GV G+L G
Sbjct: 648 FVVNFSTSLCVFITAIALYYTTQEESYLYAPLSGFYGVLTGLLVG 692
>01_01_0020 +
147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = -2
Query: 543 PGYKIGHVFVADVKVTSGF-SEPL*VTFPLPSFALMTQ*PSAPSGPFLTLKP*IPRTFSI 367
PG H FV + KV F P +T+ +P+ A + + A S P L L R
Sbjct: 89 PGVTASHAFVLETKVQGRFQGSPAVITYRVPTKAALQE---AYSTPILALDVLAERPPEK 145
Query: 366 KLSWSVCMAS 337
K W+ +S
Sbjct: 146 KFEWAKVTSS 155
>03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798
Length = 289
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = +3
Query: 282 PSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQ-TAPRVTGSSMRKKA 458
P P K +S R KPT T +K S + E Q +AP T S K+A
Sbjct: 87 PKPRKHKGAKSEKPHRVSGEGEKPTPTKKKKKKESSKEPKREKQQASAPMSTPSKKNKEA 146
Query: 459 KGKSPTTALKNPT 497
K + PT
Sbjct: 147 KRDTGGAGKPTPT 159
>06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,
8332461-8332619,8333246-8333372,8333444-8333775,
8333859-8334593,8334735-8335073,8335160-8335313,
8335405-8336154,8336242-8336372
Length = 1565
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 317 KYMKILEEAMQTDQDNLIEKVRGIYGFKVRNGPDGAE 427
+Y K L E++ + + KV G+Y RN DG E
Sbjct: 1367 EYFKYLTESVSSGSPTCLAKVLGLYQVAARNLRDGKE 1403
>03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238
Length = 697
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 279 PPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRV 431
PP P KA + +RPC P+ + S+ S+ S + APRV
Sbjct: 21 PPPPPPAKAAAAE-----AERPCPPSSAATTSSSSSSSASAAPAAAGAPRV 66
>03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684
Length = 222
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 383 GIYGFKVRNGPDGAEGYWVINAKEGKGKVTYNGSEKPDVTF 505
G+ G K+ A W +A++G G+ Y GS PD F
Sbjct: 103 GLAGLKMARAASTASR-WRASAEQGSGEDDYGGSVVPDAGF 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,409,401
Number of Sequences: 37544
Number of extensions: 435762
Number of successful extensions: 1107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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