Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00300
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19024| Best HMM Match : Thiolase_C (HMM E-Value=5.4e-36)            70   2e-12
SB_1573| Best HMM Match : Thiolase_C (HMM E-Value=1.6e-40)             51   1e-06
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)              47   1e-05
SB_28855| Best HMM Match : SCP2 (HMM E-Value=0.0011)                   47   2e-05
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)               46   3e-05
SB_12155| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.14 
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)                  32   0.43 
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)                   32   0.57 
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.00 
SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.3  
SB_55319| Best HMM Match : Hexapep (HMM E-Value=0.16)                  29   3.0  
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_48762| Best HMM Match : Hexapep (HMM E-Value=0.3)                   29   4.0  
SB_47624| Best HMM Match : Caudal_act (HMM E-Value=0.66)               29   4.0  
SB_31525| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_21892| Best HMM Match : Hexapep (HMM E-Value=3.8e-05)               29   5.3  
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              28   7.0  
SB_42806| Best HMM Match : MORN (HMM E-Value=0)                        28   9.3  

>SB_19024| Best HMM Match : Thiolase_C (HMM E-Value=5.4e-36)
          Length = 330

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 29/77 (37%), Positives = 45/77 (58%)
 Frame = +2

Query: 278 AAVADNPEGFKVFKYMKILEEAMQTDQDNLIEKVRGIYGFKVRNGPDGAEGYWVINAKEG 457
           AA A   +GFK       +E+ ++ D    ++KV+G+Y FK++ GP G EG WV++ K G
Sbjct: 162 AATATGKDGFKSAAVFDEIEKQIKKDGAKFVKKVKGVYCFKIQGGPGGKEGVWVVDVKSG 221

Query: 458 KGKVTYNGSEKPDVTFT 508
            G V +  ++K D T T
Sbjct: 222 NGSVKFGANDKADCTIT 238



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 20/29 (68%), Positives = 26/29 (89%)
 Frame = +3

Query: 168 REVPRARIALQHNLGLGGAVVITMYRKGF 254
           R+VP A++ALQHNLGLGGAV++ +YR GF
Sbjct: 121 RQVPGAKLALQHNLGLGGAVIVALYRMGF 149


>SB_1573| Best HMM Match : Thiolase_C (HMM E-Value=1.6e-40)
          Length = 331

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 20/29 (68%), Positives = 26/29 (89%)
 Frame = +3

Query: 168 REVPRARIALQHNLGLGGAVVITMYRKGF 254
           R+VP A++ALQHNLGLGGAV++ +YR GF
Sbjct: 266 RQVPGAKLALQHNLGLGGAVIVALYRMGF 294


>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
          Length = 717

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 20/43 (46%), Positives = 29/43 (67%)
 Frame = +1

Query: 514 DEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLTDLQRQAA 642
           DED+  + +GK NPQ+ F +GK+K+ GN+ L MKL  L +  A
Sbjct: 673 DEDLISMATGKANPQQLFMKGKLKVAGNIMLTMKLNQLFKDYA 715


>SB_28855| Best HMM Match : SCP2 (HMM E-Value=0.0011)
          Length = 66

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/45 (44%), Positives = 30/45 (66%)
 Frame = +1

Query: 517 EDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLTDLQRQAAGRI 651
           ED   +  G+LNP +AF  GK+KI+G+M +AMKL  L +Q   ++
Sbjct: 22  EDFVKMFKGQLNPTQAFMAGKLKIKGDMMVAMKLEKLMKQLKSKL 66


>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 20/40 (50%), Positives = 28/40 (70%)
 Frame = +1

Query: 517 EDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLTDLQRQ 636
           ED   +  G+LNP +AF  GK+KI+G+M +AMKL  L +Q
Sbjct: 227 EDFVKMFKGQLNPTQAFMAGKLKIKGDMMVAMKLEKLMKQ 266


>SB_12155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = +3

Query: 168 REVPRARIALQHNLGLGGAVVI 233
           R+V  AR+A+QHN G+GGA V+
Sbjct: 236 RQVEGARVAMQHNYGIGGAAVL 257


>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
          Length = 1313

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 32/140 (22%), Positives = 54/140 (38%)
 Frame = +3

Query: 78   SLSAVSVTQGVDYTTSGSIRIQSSGSPVVYREVPRARIALQHNLGLGGAVVITMYRKGFQ 257
            S S+ S +    Y++S S    SSGS            A   + G   A V    ++   
Sbjct: 1014 SSSSSSSSGSSSYSSSSSTGSSSSGSSRSSSSSSSGSSASSSSSGNDAAKVKKEVKEAKG 1073

Query: 258  T*RRTMWPPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTG 437
              +  +        KAL  S           PT+   SR+S   +VS+S +     + + 
Sbjct: 1074 ESKEVVKESKEVKNKALPDSKPAVKSSPSPPPTKPRPSRRSLSKSVSKSPSPARKGKRSS 1133

Query: 438  SSMRKKAKGKSPTTALKNPT 497
            SS   +++ +SP    ++PT
Sbjct: 1134 SSSSSRSRSRSPRRRKRSPT 1153


>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
          Length = 361

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
 Frame = +3

Query: 384 GSTVSRSETVQ--TAPRVTGSSMRKKAKGKSPTTALKNPT-*PSXXXXXXXXXXXXETEP 554
           GS++  ++T    T+P+ T  + R  +    PTTA   PT  PS            E +P
Sbjct: 10  GSSLRSNKTPSKATSPKPTAPATRPTSTSTKPTTASTKPTSPPSQAARTRNTAEKPEEKP 69

Query: 555 --SEGVLPRKDQDPGQHGAGYEAD*FAASSRRQDRDDPI 665
             S    P     PGQ G  +  + F   S   D DDP+
Sbjct: 70  ASSGAASPIPASKPGQPGKKFNINKF--DSLGFDEDDPL 106


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +3

Query: 279 PPSPTTRKALRSSNT*RSLKRPCKPTRTT*S-RKSAGSTVSRSETVQTAPRVTGSSMRKK 455
           P +PT      +  T ++   P KPT TT +  K + +T + +   QT P  T  S    
Sbjct: 5   PTAPTLTTPTLTKATPQTTPTPTKPTPTTHTPTKPSPTTPTSTAPTQTTPTPTTPSPTAP 64

Query: 456 AKGKSPTTALKNPT*PS 506
            +  +PT A   PT P+
Sbjct: 65  TQ-TTPTPATPTPTTPT 80


>SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 336 KRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMRKK 455
           K P  P R++    S+ S+ S SE  QT  RV  S+ +KK
Sbjct: 291 KEPSSPARSSVESNSSSSSTSSSEKGQTEIRVHDSAEQKK 330


>SB_55319| Best HMM Match : Hexapep (HMM E-Value=0.16)
          Length = 224

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 445 IDDPVTLGAVWTVSDLETVDPADFLDQVVLVGLHGLFKDLHVFEDL 308
           +DD   +  V  + D+E VD    LD V +V    L  D+ V ED+
Sbjct: 168 LDDVDVVNGVTLLDDVEVVDGVTLLDDVDVVDGDTLLDDVDVVEDV 213


>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +3

Query: 291 TTRK-ALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSR----SETVQTAPRVTGSSMRKK 455
           TTR    RSSNT RSL R    T    +R+S+ +T S     S T ++  R + ++ R  
Sbjct: 683 TTRSHTRRSSNTTRSLTRRSSNTTRGHTRRSSNTTRSHTRRSSNTTRSLTRRSSNTTRSH 742

Query: 456 AKGKSPTT 479
            +  S TT
Sbjct: 743 TRRSSNTT 750


>SB_48762| Best HMM Match : Hexapep (HMM E-Value=0.3)
          Length = 592

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 445 IDDPVTLGAVWTVSDLETVDPADFLDQVVLVGLHGLFKDLHVFEDL 308
           +DD   +  V  + D+  VD    LD V +V    L  D+HV ED+
Sbjct: 397 LDDVDVVDGVTLLDDVVVVDGDPLLDDVDVVDGDTLMDDVHVVEDV 442


>SB_47624| Best HMM Match : Caudal_act (HMM E-Value=0.66)
          Length = 424

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = +3

Query: 270 TMWPPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMR 449
           T WPP+ +T     SS    S       + +  SR    S+  +  +  T  +    S +
Sbjct: 350 TTWPPATSTLLQSASSTATSSNSTSTATSMSVKSRSHIASSTVQQPSTSTRNKEHPKSGQ 409

Query: 450 KKAKGKSPTTALKN 491
            K+KG+S  T  K+
Sbjct: 410 SKSKGRSKYTQSKS 423


>SB_31525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 293 CRRRRPHCSASRLESFTVHCDDDS-TPETQVMLQRYPGAWHLTVDDR 156
           C    P C  +++ES T+H    + TPE  + L R       TV+ R
Sbjct: 101 CNGNSPRCLLAKVESLTIHDQIVTITPEEDIKLSRIANGDDQTVETR 147


>SB_21892| Best HMM Match : Hexapep (HMM E-Value=3.8e-05)
          Length = 462

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 445 IDDPVTLGAVWTVSDLETVDPADFLDQVVLVGLHGLFKDLHVFEDL 308
           +DD   +  V  + D++ VD    LD+V +V    L  D+ V ED+
Sbjct: 133 LDDVDVVDGVTLLDDVDVVDGVTLLDEVDVVDGDPLLDDVDVVEDV 178


>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = +3

Query: 255 QT*RRTMWPPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVT 434
           +T  RT  PP+PT+ +A  S  + R   +  K   T  SR+  G T ++++   T  RV+
Sbjct: 352 RTGSRTRTPPTPTSSRA-SSRGSARGGAKTTKKCTTRKSREQNGDTKTKTKCA-TTRRVS 409

Query: 435 GSSMRKK 455
           G    ++
Sbjct: 410 GHGTNQR 416


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -3

Query: 293 CRRRRPHCSASRLESFTVHCDDDSTPETQVMLQRYPGAWHLTV 165
           C R R  C   R     + C  DS P  Q +  RY    H+TV
Sbjct: 89  CTRSRHECITERTRHEYITCGHDSNPSRQRIRSRYE---HITV 128


>SB_42806| Best HMM Match : MORN (HMM E-Value=0)
          Length = 778

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +2

Query: 377 VRGI-YGFKVRNGPDGAE--GYWVINAKEGKGKVTYNGSEKPDVTF-TSATKTWPILYPG 544
           V G+ +G+ V     GA+  G W  N K GKGK  +   +  + TF       +P  YP 
Sbjct: 269 VNGLRHGYGVFTYASGAKYVGEWASNMKHGKGKYIFKNGQVFEGTFEQDHMLDFPDFYPS 328

Query: 545 N*T 553
             T
Sbjct: 329 GMT 331


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,929,382
Number of Sequences: 59808
Number of extensions: 463664
Number of successful extensions: 1289
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)