Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00299
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 144 8e-35
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 140 1e-33
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 132 3e-31
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 124 7e-29
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 65 5e-11
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 55 5e-08
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 6e-04
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 0.90
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08) 30 1.6
SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3) 29 2.7
SB_24762| Best HMM Match : Astacin (HMM E-Value=0) 29 3.6
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 4.8
SB_42630| Best HMM Match : Ets (HMM E-Value=0) 28 8.4
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 28 8.4
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0) 28 8.4
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 28 8.4
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 144 bits (348), Expect = 8e-35
Identities = 80/150 (53%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Frame = +2
Query: 251 PHNTIFDAKRLIGRKFEDATVQADMKHWPIEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 430
P NTIFDAKRLIGR+++DATVQ+DMK WP +++SD KPKI+V YKGE KTF EE+SSM
Sbjct: 63 PENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISSM 122
Query: 431 VLTKMKETAEAYLGKTVQNAVITVPATSMTLKDKPQKMQVPSLA*TFSESSMNXXXXXXX 610
VL KMKETAEAYLG+ V +AVITVPA + + K ++A +N
Sbjct: 123 VLGKMKETAEAYLGQKVTSAVITVPAYFNDSQRQATK-DAGTIAGLNVLRVINEPTAAAL 181
Query: 611 XXXXXXXXENEM-YLSLNLGGGTFDVSILT 697
E L +LGGGTFDVSILT
Sbjct: 182 AYGLDKSLSGEKNVLIFDLGGGTFDVSILT 211
Score = 127 bits (306), Expect = 1e-29
Identities = 57/63 (90%), Positives = 61/63 (96%)
Frame = +3
Query: 66 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 245
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 246 MNP 254
+NP
Sbjct: 61 LNP 63
Score = 91.9 bits (218), Expect = 5e-19
Identities = 42/50 (84%), Positives = 48/50 (96%)
Frame = +1
Query: 511 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFE 660
FNDSQRQATKDAGTI+GLNVLR+INEPTAAA+AYGLDK +GE+NVLIF+
Sbjct: 150 FNDSQRQATKDAGTIAGLNVLRVINEPTAAALAYGLDKSLSGEKNVLIFD 199
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 140 bits (338), Expect = 1e-33
Identities = 76/150 (50%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Frame = +2
Query: 251 PHNTIFDAKRLIGRKFEDATVQADMKHWPIEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 430
P NT+FDAKRLIGRKF+D V DM HWP V+ +G +PKI+V +KGE K+FFPEE+SSM
Sbjct: 63 PENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEISSM 122
Query: 431 VLTKMKETAEAYLGKTVQNAVITVPATSMTLKDKPQKMQVPSLA*TFSESSMNXXXXXXX 610
VLTKMKETAEAYLG V +AV+TVPA + + K ++A +N
Sbjct: 123 VLTKMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATK-DAGTIAGLNVLRIINEPTAAAI 181
Query: 611 XXXXXXXXENEM-YLSLNLGGGTFDVSILT 697
E L +LGGGTFDVS+LT
Sbjct: 182 AYGLDKKVGVERNVLIYDLGGGTFDVSVLT 211
Score = 132 bits (318), Expect = 3e-31
Identities = 61/63 (96%), Positives = 62/63 (98%)
Frame = +3
Query: 66 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 245
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 246 MNP 254
MNP
Sbjct: 61 MNP 63
Score = 88.6 bits (210), Expect = 4e-18
Identities = 43/50 (86%), Positives = 47/50 (94%)
Frame = +1
Query: 511 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFE 660
F+DSQRQATKDAGTI+GLNVLRIINEPTAAAIAYGLDKK ERNVLI++
Sbjct: 150 FHDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGVERNVLIYD 199
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 132 bits (319), Expect = 3e-31
Identities = 60/64 (93%), Positives = 62/64 (96%)
Frame = +3
Query: 66 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 245
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 246 MNPT 257
MNPT
Sbjct: 61 MNPT 64
Score = 111 bits (267), Expect = 5e-25
Identities = 63/111 (56%), Positives = 72/111 (64%), Gaps = 25/111 (22%)
Frame = +2
Query: 251 PHNTIFDAKRLIGRKFEDATVQADMKHWPIEVVSDGGKPKIKVAYKGEDKTFFPEEV--- 421
P NTIFDAKRLIGR+F+D V+ DMKHW EVV++ G+PK+KV YKGE KTFF EEV
Sbjct: 63 PTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVVNE 122
Query: 422 ----------------------SSMVLTKMKETAEAYLGKTVQNAVITVPA 508
SSMVL KMKETAEAYLG V +AV+TVPA
Sbjct: 123 AGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVPA 173
Score = 91.5 bits (217), Expect = 6e-19
Identities = 45/50 (90%), Positives = 46/50 (92%)
Frame = +1
Query: 511 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFE 660
FNDSQRQATKDAG ISGLNVLRIINEPTAAAIAYGLDKK ERNVLIF+
Sbjct: 243 FNDSQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKVGQERNVLIFD 292
Score = 53.2 bits (122), Expect = 2e-07
Identities = 35/94 (37%), Positives = 45/94 (47%)
Frame = +2
Query: 416 EVSSMVLTKMKETAEAYLGKTVQNAVITVPATSMTLKDKPQKMQVPSLA*TFSESSMNXX 595
++SSMVL KMKETAEAYLG V +AV+TVPA + + K
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQATKDAGVISGLNVLRIINEPT 270
Query: 596 XXXXXXXXXXXXXENEMYLSLNLGGGTFDVSILT 697
+ L +LGGGTFDVS+L+
Sbjct: 271 AAAIAYGLDKKVGQERNVLIFDLGGGTFDVSVLS 304
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 511 FNDSQRQATKDAG 549
FNDSQRQATKDAG
Sbjct: 175 FNDSQRQATKDAG 187
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 124 bits (299), Expect = 7e-29
Identities = 69/149 (46%), Positives = 90/149 (60%)
Frame = +2
Query: 251 PHNTIFDAKRLIGRKFEDATVQADMKHWPIEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 430
P NT+FDAKRLIGR ++D +VQ D+K +P +VV KP ++V K E KTF EE+S+M
Sbjct: 761 PENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISAM 820
Query: 431 VLTKMKETAEAYLGKTVQNAVITVPATSMTLKDKPQKMQVPSLA*TFSESSMNXXXXXXX 610
VLTKMKETAEAYLGK V +AV+TVPA + + K ++A +N
Sbjct: 821 VLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATK-DAGAIAGLTVMRIINEPTAAAI 879
Query: 611 XXXXXXXXENEMYLSLNLGGGTFDVSILT 697
+ L +LGGGTFDVS+LT
Sbjct: 880 AYGMDKKEGEKNILVFDLGGGTFDVSLLT 908
Score = 99 bits (238), Expect = 2e-21
Identities = 46/58 (79%), Positives = 52/58 (89%), Gaps = 1/58 (1%)
Frame = +3
Query: 84 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNP 254
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ NP
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNP 761
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 69.7 bits (163), Expect = 2e-12
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 NTIFDAKRLIGRKFEDATVQADMKHWPIEVVS-DGGKPKIKVAYKGEDKTFFPEEVSSMV 433
NTI KR IGRKF D VQ ++ H P +VV I+V Y G+ + F PE+V +M+
Sbjct: 121 NTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVMAML 180
Query: 434 LTKMKETAEAYLGKTVQNAVITVPA 508
T++K TAE L V + VI+VP+
Sbjct: 181 FTRLKTTAEIALKTKVTDCVISVPS 205
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +3
Query: 84 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 239
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +1
Query: 511 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK 627
+ D QR+ DA +GLN LR++N+ TA ++AYG+ K+
Sbjct: 207 YTDRQRRCMLDASATAGLNCLRLMNDTTAVSLAYGIYKQ 245
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 65.3 bits (152), Expect = 5e-11
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Frame = +3
Query: 72 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 245
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 246 MNP 254
+NP
Sbjct: 90 INP 92
Score = 65.3 bits (152), Expect = 5e-11
Identities = 47/149 (31%), Positives = 67/149 (44%), Gaps = 1/149 (0%)
Frame = +2
Query: 251 PHNTIFDAKRLIGRKFEDATVQADMKHWPIEVVSDG-GKPKIKVAYKGEDKTFFPEEVSS 427
P NTI+DAKR IG+ F + K + V +D G V KG PEE+
Sbjct: 92 PKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEIGG 151
Query: 428 MVLTKMKETAEAYLGKTVQNAVITVPATSMTLKDKPQKMQVPSLA*TFSESSMNXXXXXX 607
V+ K++ AE L TV AV++VPA +K + ++ SLA +N
Sbjct: 152 YVIKKLRTMAERNLTTTVTKAVMSVPA-EFDIKQRNATVKAASLAGITVLRVINEPTAAA 210
Query: 608 XXXXXXXXXENEMYLSLNLGGGTFDVSIL 694
+ ++LGGGT DVS+L
Sbjct: 211 LAYGLHKKEGVANVMVVDLGGGTLDVSLL 239
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/51 (52%), Positives = 38/51 (74%)
Frame = +1
Query: 508 DFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFE 660
+F+ QR AT A +++G+ VLR+INEPTAAA+AYGL KK G NV++ +
Sbjct: 179 EFDIKQRNATVKAASLAGITVLRVINEPTAAALAYGLHKK-EGVANVMVVD 228
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 55.2 bits (127), Expect = 5e-08
Identities = 39/71 (54%), Positives = 42/71 (59%), Gaps = 26/71 (36%)
Frame = +1
Query: 511 FNDSQRQATKDAGTISGLNVL------------------------RIINEPTAAAIAYGL 618
FND+QRQATKDAGTI+GL+VL RIINEPTAAAIAYGL
Sbjct: 49 FNDAQRQATKDAGTIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIAYGL 108
Query: 619 DKK--GTGERN 645
DK G ERN
Sbjct: 109 DKARGGKAERN 119
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/46 (52%), Positives = 35/46 (76%)
Frame = +2
Query: 371 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPA 508
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVPA
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPA 47
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 135 GKVEIIANDQGNRTTPSYVAFTDTERLI 218
G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +1
Query: 511 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGL 618
FN ++R+A A + GLNVL+I+N TA A+ YGL
Sbjct: 116 FNQAERRALLRAAELVGLNVLQIMNSNTAVALNYGL 151
Score = 34.3 bits (75), Expect = 0.096
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 365 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 505
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVP 113
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +3
Query: 144 EIIANDQGNRTTPSYVAFT-DTERL 215
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
Length = 1011
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +2
Query: 362 KPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPATSMTLKDKPQK 541
+PK K + E+ EE +M ++K LGK V+ + T ++TL + Q
Sbjct: 654 QPKFKKTKEEEEFDKLLEEADAMTQQEVKNVKNIKLGKNVKTQLYTCEPCNITLNSQKQM 713
Query: 542 MQ 547
Q
Sbjct: 714 SQ 715
>SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 53 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 229
L++ N + ++ + R GY L R C R + +R + H++L R +RC
Sbjct: 225 LRLVNTRDDKTHDKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTETETRFCAKRCA 282
Query: 230 QEPGGDEPHNTIFDA 274
G +P NT F+A
Sbjct: 283 GTASGMDPKNTPFNA 297
>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
Length = 350
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 252 GSSPPGSWRHLR*DARCL*TQHKTEWSCCPGRW 154
GS PPG W R +AR T +T +SC PG W
Sbjct: 206 GSCPPGFWCRKRREARAA-TDLET-YSCPPGFW 236
>SB_24762| Best HMM Match : Astacin (HMM E-Value=0)
Length = 733
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 547 LHLLWLVFESH*SRGNRDNCILHSFAKIS 461
++ LWL F + S + D C+LHS A ++
Sbjct: 415 IYTLWLDFSRYYSSASSDICVLHSIAHLA 443
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 12 HVC*VVLRTSNKTD*KYKMAKAPAVGIDL 98
HVC +V T K K ++K PA GI+L
Sbjct: 1200 HVCNIVSNTETKITCKLDVSKTPAPGIEL 1228
>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
Length = 631
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 94 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 237
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 42 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 89
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 409 PRGSQFHGAYENEGNCRSLSWQNCAECSYHGSRDFN 516
PRG Q Y G+C S+S +NC + S+ + +N
Sbjct: 1142 PRGKQI--PYGTAGDCYSVSQENCRKGSFKVTYQYN 1175
>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1774
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 654 DKYISFSSTLFVKTVSNRSSSRFIDDSEN 568
+K ISF +LF+ VSN S+ R+I +E+
Sbjct: 752 NKVISFGPSLFMDKVSNASAGRYICIAES 780
>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 977
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 94 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 237
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 388 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 435
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/72 (23%), Positives = 29/72 (40%)
Frame = +3
Query: 105 TYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTTQYSMPNVS 284
T++ + H I+ N G +TP + T A + + M PT V+
Sbjct: 559 THTTTSITLHPSSAILDNSLGPASTPRTTISSTTHVSSTPIASSSMVMTPTAINPSATVT 618
Query: 285 SDVSSKMLLCKP 320
+ V S ++ KP
Sbjct: 619 TTVPSTSVVVKP 630
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,358,738
Number of Sequences: 59808
Number of extensions: 574258
Number of successful extensions: 1922
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1912
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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