Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00298
         (805 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22N01 Cluster: Putative uncharacterized protein; n=1; ...    35   2.1  
UniRef50_A6LZJ5 Cluster: Iron-sulfur flavoprotein; n=2; Clostrid...    33   6.4  
UniRef50_Q8II99 Cluster: Putative uncharacterized protein; n=1; ...    33   8.4  

>UniRef50_Q22N01 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1904

 Score = 35.1 bits (77), Expect = 2.1
 Identities = 16/33 (48%), Positives = 24/33 (72%)
 Frame = +2

Query: 398  ILKLLNDVMGMECYKNKDKLYQILIICFVKEFY 496
            +  LLND++ M  +KNK  LY+ + ICF+KEF+
Sbjct: 1537 VYDLLNDIV-MN-FKNKRTLYKSIFICFIKEFF 1567


>UniRef50_A6LZJ5 Cluster: Iron-sulfur flavoprotein; n=2;
           Clostridium|Rep: Iron-sulfur flavoprotein - Clostridium
           beijerinckii NCIMB 8052
          Length = 460

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
 Frame = +1

Query: 127 DNTLNKIIEKKKFYIKGN---LRLNSVNARGRC 216
           DN LN++I+K K ++KG+   L LN V+ +G C
Sbjct: 206 DNNLNEMIDKYKSFVKGSVEILNLNEVDIKGAC 238


>UniRef50_Q8II99 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 1368

 Score = 33.1 bits (72), Expect = 8.4
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = +1

Query: 139 NKIIEKKKFYIKGNLRLNSVNARGRCPHATYDAYAIYLPLD*GCPNYILLRAN*IY--YK 312
           NK    KKF+IK    +NS    G    AT++     +       N+ LLR    Y  Y 
Sbjct: 147 NKYEFVKKFFIKNLFYINSFGNNGELCFATWEINQAKM-----YTNFFLLRFIFEYESYM 201

Query: 313 SWRAAEKIFNKNKLKKQGVINTFQNSH 393
           S      + NKN ++K+  I+T  N H
Sbjct: 202 SENYPNNLKNKNDIEKEKYISTLLNHH 228


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 801,476,890
Number of Sequences: 1657284
Number of extensions: 16972402
Number of successful extensions: 37465
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37433
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69143070360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)