Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00298
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    28   1.8  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   5.5  
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    26   7.2  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   7.2  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   7.2  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    25   9.5  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -1

Query: 541 PYFNQKIVLDIIVWIIEFFDKTYNQYLV-*FIFILVAFHSHDII*KF*YYCGNSGKYLLP 365
           P+F +K  L ++ W+I  F  + ++Y+   FI   + FH H     F    G S     P
Sbjct: 103 PFFTEKNALKVLEWLIRRF--SIHEYVSDEFILSFLPFHDHPF---FARILGCSKPKSRP 157

Query: 364 LVFL 353
           L+FL
Sbjct: 158 LLFL 161


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 274 NYILLRAN*IYYKSWRAAEKIFNKNKLKKQGVINTFQNSH 393
           NY LL +  I Y  WR A  I  +NK   +  ++  +  H
Sbjct: 277 NYHLLSSKYISYLKWRKAYLIIQENKHLTESGLSQIKKPH 316


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -2

Query: 744 QGEAEIASQDHQHRYEKKKDPHRHTNDNVYLRLQLQIKATRACTLSA 604
           Q E  ++ +  + +Y  K+DP +H +  V   +   I +  AC L +
Sbjct: 259 QNEVTLSPEQLRIQYVGKQDPKKHLDAEVQKCIDNNISSMLACMLDS 305


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 771 LEPVSSPTRQGEAEIASQDHQHRYEKKKDPHRHTNDNV 658
           +E  S+P   G  E+ + +   + E K++P +  N NV
Sbjct: 209 VEQQSAPNSNGNEEVNNLEPVGQNESKQEPPKEENSNV 246


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 377 LSRIPTIILKLLNDVMGMECYKNKDKLYQILIICFVKEFYYPNYY 511
           L + P ++ +++ + + M C  N   L  I + CF K   Y NY+
Sbjct: 165 LQKQPFLLPEVILEPLVMACQTNSTTLLTITLDCFAKLIDY-NYF 208


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 774 RLEPVSSPTRQGEAEIASQDHQHRYEKKKDPHRHTNDNVYL 652
           R   V + +     EI ++D + + EK  D H   ND  +L
Sbjct: 675 RFSEVPTTSSVPPVEIKNKDSKPKVEKSLDKHNMNNDRSFL 715


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,439,589
Number of Sequences: 5004
Number of extensions: 77233
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)