Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00298
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0708 + 26475306-26478404                                         33   0.35 
08_02_0329 - 15833124-15833825                                         29   4.3  
04_04_1553 - 34363848-34366058,34369087-34370451                       29   4.3  
02_02_0314 - 8868481-8868765,8868900-8869148,8870186-8870566           28   7.6  
07_03_0264 - 15958690-15958910,15959410-15959484,15959547-159597...    28   10.0 

>11_06_0708 + 26475306-26478404
          Length = 1032

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 404 KLLNDVMGMECYKNKDKLYQILIICFVKEFYYP-NYYIQNYFLIKIWVA 547
           KL  ++ G   Y + D L Q L  CF+    YP ++ I  Y+LI++WVA
Sbjct: 399 KLPKEIRGA-LYLSYDDLPQHLKQCFLYCIVYPEDWTIHRYYLIRLWVA 446


>08_02_0329 - 15833124-15833825
          Length = 233

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 792 SVLATHRLEPVSSPTRQGEAEIASQDHQHRYEKKKDPHR 676
           + +  H L+P +S  +Q + +   QD   +  KKK PHR
Sbjct: 24  TTIRAHILKPNTSNQQQQQQQQQQQDLSKKNNKKKKPHR 62


>04_04_1553 - 34363848-34366058,34369087-34370451
          Length = 1191

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 633 LFVVVIVNTHYHLCDDAGLSFFHTYADGLERL 728
           +FV+ I   H  +CD A L+    ++DGL+R+
Sbjct: 485 VFVLHIHGGHSQMCDPADLASLLAFSDGLDRM 516


>02_02_0314 - 8868481-8868765,8868900-8869148,8870186-8870566
          Length = 304

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 22/73 (30%), Positives = 34/73 (46%)
 Frame = +3

Query: 573 WTALLFIVLTKPTKYKRAWPLFVVVIVNTHYHLCDDAGLSFFHTYADGLERLFQLLLDV* 752
           W    +   T+      A  L +++ VN H  L   AG+ +    A GL+  F  L++V 
Sbjct: 47  WHLSAWSATTRSGLAAAALGLLLLLAVNAHDLLAHAAGVDYSLALAAGLDSQF-ALVEVA 105

Query: 753 VSSRAQAGVLLTL 791
           V +   AG +LTL
Sbjct: 106 VPAVHFAGTVLTL 118


>07_03_0264 -
           15958690-15958910,15959410-15959484,15959547-15959775,
           15960312-15960587,15962109-15962369,15962632-15962781,
           15963555-15963591,15963958-15964024,15964228-15964291,
           15964643-15964812,15965046-15965124,15965576-15965733,
           15965862-15966030,15966531-15966602,15966977-15967018,
           15967245-15967488,15968782-15968963
          Length = 831

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 573 WTALLFIVLTKPTKYKRAWPLFVVVIVNTHYHLCDDAG--LSFFHTYADGLE 722
           WTA+LF  L KP   K    +F+ + +++ Y + + +   +S F  Y D  E
Sbjct: 683 WTAMLFRTLLKPESQKFILDVFLALAMHSCYKIPETSWICMSRFLNYLDRQE 734


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,624,187
Number of Sequences: 37544
Number of extensions: 426591
Number of successful extensions: 774
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)