Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00298
         (805 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64858-8|AAB18286.3|  288|Caenorhabditis elegans Serpentine rece...    30   2.2  
AF100305-8|AAC68919.1|  179|Caenorhabditis elegans Hypothetical ...    30   2.2  
AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical ...    30   2.2  
U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical ...    29   3.9  
U55368-5|AAA97992.2|  333|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z81555-4|CAB04515.1|  202|Caenorhabditis elegans Hypothetical pr...    28   9.0  
AY519854-1|AAR89635.1|  229|Caenorhabditis elegans arsenite indu...    28   9.0  

>U64858-8|AAB18286.3|  288|Caenorhabditis elegans Serpentine
           receptor, class t protein25 protein.
          Length = 288

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 455 LYQILIICFVKEFYYPNYYIQNYFLIKIWV 544
           LYQ + +CF+ +     Y I N+ L+  W+
Sbjct: 202 LYQSIAVCFINQVSSSVYVIMNFVLVPEWI 231


>AF100305-8|AAC68919.1|  179|Caenorhabditis elegans Hypothetical
           protein W04B5.6 protein.
          Length = 179

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
 Frame = +3

Query: 414 MMSWEWNATRIKINYTKY*LYVLSKNSI-IQTIISKTIF*LKYGSRVA*KRAVVWTALLF 590
           ++ W       K     Y ++V  + SI + TI S+ +F LK GS  A    + +T++LF
Sbjct: 61  VLFWSRENNNEKFGELAYCIFVFVRISIYLVTIFSEVVF-LKMGSDDAPISFLCFTSVLF 119

Query: 591 I---VLTKPTKYKRAWP-LFVVVI 650
           +   +  K  K K  WP LF + +
Sbjct: 120 VYACIYVKYCKTKNFWPNLFQIFL 143


>AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical
           protein E02H9.6 protein.
          Length = 460

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
 Frame = +3

Query: 414 MMSWEWNATRIKINYTKY*LYVLSKNSI-IQTIISKTIF*LKYGSRVA*KRAVVWTALLF 590
           ++ W       K     Y ++V  + SI + TI S+ +F LK GS  A    + +T++LF
Sbjct: 61  VLFWSRENNNEKFGELAYCIFVFVRISIYLVTIFSEVVF-LKMGSDDAPISFLCFTSVLF 119

Query: 591 I---VLTKPTKYKRAWP-LFVVVI 650
           +   +  K  K K  WP LF + +
Sbjct: 120 VYACIYVKYCKTKNFWPNLFQIFL 143


>U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical
           protein C56E6.5 protein.
          Length = 595

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 470 SIFGIIYL-YSCSIPFP*HHLKVLILLWEFWKVFITPCFFNLFLLNIFSAAL 318
           +IF I +L YSC        L V I+LW F    +     NLFLL+IFS ++
Sbjct: 413 TIFSIFFLVYSCIQS----SLFVGIVLWSFKSEAMFQISLNLFLLSIFSFSI 460


>AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical
           protein Y9C9A.8 protein.
          Length = 666

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 636 FVVVIVNTHYHLCDDAGLSFFHTYADGLERLFQLLLD 746
           F+++ +N H+ L     + FF+T+ D + R + L  D
Sbjct: 106 FILISINFHFLLLTLKNVKFFNTFRDSINRTYGLDAD 142


>U55368-5|AAA97992.2|  333|Caenorhabditis elegans Hypothetical
           protein T08H10.1 protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 313 SWRAAEKIFNKNKLKKQGVIN 375
           +WRA EK++ + KLK  GV N
Sbjct: 144 TWRALEKLYKEGKLKALGVSN 164


>Z81555-4|CAB04515.1|  202|Caenorhabditis elegans Hypothetical
           protein F58E10.4 protein.
          Length = 202

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 786 LATHRLEPVSSPTR-QGEAEIASQDHQHRYEKKKDPHRHTNDN 661
           +A  R+ P S+  R +G+  +A    Q  Y +   PH+  N N
Sbjct: 154 IARSRMNPCSAQARTEGDEALARSLQQEEYNRVAPPHQTRNSN 196


>AY519854-1|AAR89635.1|  229|Caenorhabditis elegans arsenite
           inducible RNA associatedprotein (aip-1) protein.
          Length = 229

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 786 LATHRLEPVSSPTR-QGEAEIASQDHQHRYEKKKDPHRHTNDN 661
           +A  R+ P S+  R +G+  +A    Q  Y +   PH+  N N
Sbjct: 181 IARSRMNPCSAQARTEGDEALARSLQQEEYNRVAPPHQTRNSN 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,753,845
Number of Sequences: 27780
Number of extensions: 419845
Number of successful extensions: 1060
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)