Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00298
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.5  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 658 HIIICVTMRVFLFFIPMLMVLRGY 729
           H++     RVF+  +P L+V+R Y
Sbjct: 335 HVMAPWVRRVFIHVLPRLLVMRRY 358


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 732 EIASQDHQHRYEKKKDPHRHTND 664
           E+A + HQ R +KK +  RH  D
Sbjct: 844 EVAYKKHQIRKQKKMELARHAAD 866


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 759 SSPTRQGEAEIASQDHQHRYEKKKDPHRHTNDNVYLRLQLQIKA 628
           SS      + + SQ HQ   ++K   + H N +     QL+I++
Sbjct: 39  SSSRSPSPSLLTSQPHQDHNKEKSKNNHHCNQDTEKLNQLEIES 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,592
Number of Sequences: 438
Number of extensions: 5779
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)