Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00298
         (805 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ...    29   2.7  
At5g42825.1 68418.m05217 expressed protein                             29   3.6  
At3g28350.1 68416.m03543 hypothetical protein                          29   4.8  

>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 674

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -2

Query: 759 SSPTRQGEAE--IASQDHQ-HRYEKKKDPHRHTNDNVYLRLQLQIKATR 622
           S PT   E    ++S+ H+ H YEKK   HRH   +   + Q Q K +R
Sbjct: 140 SQPTNVSEIPPLLSSEVHKIHNYEKKDHKHRHNKRSPSPQAQSQRKRSR 188


>At5g42825.1 68418.m05217 expressed protein
          Length = 97

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 615 YKRAWPLFVVVIVNTHYHLCDDAGLSFFH 701
           +KR WPL  +++VN  Y  C D  + FF+
Sbjct: 64  HKRFWPLVSLLVVNQFYADCFDILVLFFN 92


>At3g28350.1 68416.m03543 hypothetical protein
          Length = 290

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 765 PVSS-PTRQ-GEAEIASQDHQHRYEKKKDPHRHTNDNVYLRLQLQIKATRAC 616
           P+S+ P+R+ G  E+ S     RY    D    T+D+   R  L +KA R C
Sbjct: 236 PMSTMPSREFGSFELTSSGRSSRYFDCYDNSEETDDDQRTRSHLAMKARRIC 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,338,065
Number of Sequences: 28952
Number of extensions: 372429
Number of successful extensions: 787
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)