Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00297
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 291 5e-80
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 291 6e-80
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 291 6e-80
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 165 5e-42
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 155 7e-39
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 93 3e-20
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 46 5e-06
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 46 5e-06
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 45 1e-05
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 39 8e-04
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 36 0.005
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 36 0.007
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 35 0.013
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.029
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.48
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 29 0.83
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 28 1.5
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.4
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 26 4.4
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 7.8
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 291 bits (715), Expect = 5e-80
Identities = 138/155 (89%), Positives = 145/155 (93%), Gaps = 1/155 (0%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 226
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 227 DKLKAERD-WFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 403
DKLKAER+ TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 404 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 508
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKM
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKM 155
Score = 87.4 bits (207), Expect = 2e-18
Identities = 33/53 (62%), Positives = 45/53 (84%)
Frame = +1
Query: 526 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGW 684
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GW
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGW 212
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 291 bits (714), Expect = 6e-80
Identities = 137/155 (88%), Positives = 145/155 (93%), Gaps = 1/155 (0%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 226
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 227 DKLKAERD-WFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 403
DKLKAER+ TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 404 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 508
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKM
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKM 155
Score = 87.4 bits (207), Expect = 2e-18
Identities = 33/53 (62%), Positives = 45/53 (84%)
Frame = +1
Query: 526 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGW 684
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GW
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGW 212
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 291 bits (714), Expect = 6e-80
Identities = 137/155 (88%), Positives = 145/155 (93%), Gaps = 1/155 (0%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 226
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 227 DKLKAERD-WFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 403
DKLKAER+ TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 404 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 508
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKM
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKM 155
Score = 87.4 bits (207), Expect = 2e-18
Identities = 33/53 (62%), Positives = 45/53 (84%)
Frame = +1
Query: 526 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGW 684
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GW
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGW 212
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 165 bits (401), Expect = 5e-42
Identities = 76/151 (50%), Positives = 106/151 (70%), Gaps = 1/151 (0%)
Frame = +2
Query: 59 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 238
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 239 AERD-WFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 415
ER+ T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 416 AGISKNGQTREHALLAFTLGVKQLIVGVNKM 508
AG + GQTREHA+LA T G+ L+V +NKM
Sbjct: 356 AGFERGGQTREHAVLARTQGINHLVVVINKM 386
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 155 bits (375), Expect = 7e-39
Identities = 75/151 (49%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
Frame = +2
Query: 59 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 238
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 239 AERD-WFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 415
ER T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFE 294
Query: 416 AGISKNGQTREHALLAFTLGVKQLIVGVNKM 508
G +NGQTREHA L LG+ +++V VNK+
Sbjct: 295 RGFLENGQTREHAYLLRALGISEIVVSVNKL 325
Score = 45.2 bits (102), Expect = 9e-06
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +1
Query: 526 YSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFKG 681
+SE RF+EIK VS + IK +G+ + V FVPIS G N++ + S W+KG
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG 384
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 93.1 bits (221), Expect = 3e-20
Identities = 59/153 (38%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Frame = +2
Query: 53 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 232
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 233 LKAERD-WFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 409
E+ TI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
Query: 410 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 508
QTREH LLA +GVKQ++V +NK+
Sbjct: 154 MP-------QTREHLLLARQVGVKQIVVYINKV 179
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 46.0 bits (104), Expect = 5e-06
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 217
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 218 WVLDKLKAERDWFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 391
+ L AE + + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 46.0 bits (104), Expect = 5e-06
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 217
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 218 WVLDKLKAERDWFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 391
+ L AE + + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 44.8 bits (101), Expect = 1e-05
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Frame = +2
Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 250
N+ +I H+D+GK+T T ++Y G F + G V+D L AER
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 251 -WFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
TI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 38.7 bits (86), Expect = 8e-04
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 9/136 (6%)
Frame = +2
Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIEKFEKEAQEMGKGSFKY--AWVLDKLKA 241
NI + H+DSGK+T T ++Y G I D + + +M + +
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREKGITIQSAAT 120
Query: 242 ERDWF-TIDI--ALWKFETS---KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 403
W T+D A K +T Y + IID PGH DF + D AVL++ A +
Sbjct: 121 HCTWERTVDQIEANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVS 180
Query: 404 GEFEAGISKNGQTREH 451
G I+ + Q R +
Sbjct: 181 GVQSQTITVDRQMRRY 196
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 35.9 bits (79), Expect = 0.005
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Frame = +2
Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKGSFKYAWVLDKLKA 241
N ++ HVD GK+T L+ G I + T+ + E+ +G + K A
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRG------ITMKSSA 74
Query: 242 ERDWFTIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
+F + + K Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 75 ISLFFKVISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 35.5 bits (78), Expect = 0.007
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Frame = +2
Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 250
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 251 -WFTIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
T+ ++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 34.7 bits (76), Expect = 0.013
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +2
Query: 299 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 478
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 479 KQLIVGVNKM 508
K +I+ NK+
Sbjct: 163 KHIIILQNKV 172
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.029
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 281 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.48
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 308 IIDAPGHRDFIKNMITGTSQADCAVLIV 391
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 28.7 bits (61), Expect = 0.83
Identities = 27/79 (34%), Positives = 37/79 (46%)
Frame = +2
Query: 389 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMIPLNHHTVSPDLRKSRRKYP 568
VA GT E GI NG E+A+ A +I V++ P++H + KSRR+YP
Sbjct: 47 VAEGTAE---GIVSNG---EYAVGAMGAAPTNIIGSVDQQPPVSHTS-----HKSRRQYP 95
Query: 569 HTSRRLATTQLLSLSCPFL 625
L T S + P L
Sbjct: 96 AEVFELTNTLAASPAPPSL 114
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +2
Query: 227 DKLKAERDWFTIDIALWKFETSK----YYVTIIDAPGHRDFIKN 346
+K++A+ T++I + K E + +T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 311 IDAPGHRDFIKNMITGTSQADCAVLIV 391
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +2
Query: 527 TVSPDLRKSRRKYPHTSRRLATTQLL---SLSCPFLDGTETTCWSLQPKCLGSRD 682
+ +PD+ ++PHT +R +T + L LSC + +E + P G +D
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTLSEASDSMSNPLFFGDQD 199
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 233 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 105
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,586
Number of Sequences: 5004
Number of extensions: 60725
Number of successful extensions: 230
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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