Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00297
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 135 4e-32
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 116 2e-26
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 113 1e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 40 0.002
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 38 0.010
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.041
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 34 0.094
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 30 0.19
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 31 0.87
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.0
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_59270| Best HMM Match : RVT_1 (HMM E-Value=7.8e-06) 28 6.2
SB_12560| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_21189| Best HMM Match : PCI (HMM E-Value=8.2) 28 6.2
SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011) 28 8.1
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016) 28 8.1
SB_45850| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 135 bits (326), Expect = 4e-32
Identities = 61/127 (48%), Positives = 89/127 (70%), Gaps = 1/127 (0%)
Frame = +2
Query: 131 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD-WFTIDIALWKFETSKYYVT 307
Y G +DKRT+EK+E+EA+E + ++ +W LD + ERD T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 308 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 487
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 488 IVGVNKM 508
++ VNKM
Sbjct: 286 VILVNKM 292
Score = 35.1 bits (77), Expect = 0.054
Identities = 14/34 (41%), Positives = 26/34 (76%)
Frame = +1
Query: 496 SKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 597
+K +D T ++E R+EEIK +++ ++KK+G+NP
Sbjct: 290 NKMDDPTVK-WNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 116 bits (279), Expect = 2e-26
Identities = 54/60 (90%), Positives = 56/60 (93%), Gaps = 1/60 (1%)
Frame = +2
Query: 191 MGKGSFKYAWVLDKLKAERD-WFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 367
MGKGSFKYAWVLDKLKAER+ TIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 113 bits (273), Expect = 1e-25
Identities = 53/95 (55%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
Frame = +2
Query: 260 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 439
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 440 TREHALLAFTLGVKQLIVGVNK--MIPLNHHTVSP 538
TREHA+L +LGV QLIV +NK M+ L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 193
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +2
Query: 80 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD-WF 256
+I H D+GK+T T L+ G I +EA + K D ++ ER
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 257 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 37.5 bits (83), Expect = 0.010
Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQEMGKGSFK 211
M K+ N+ VI HVD GKST T L+ K G I K +F K+ Q+
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKS 71
Query: 212 YAWVLDKLKAERDWFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 391
A L E D+ I E + + +ID+PGH DF + D A+++V
Sbjct: 72 TAISLYYELPESDFEYITQPKDPKERG-FLINLIDSPGHVDFSSEVTAALRVTDGALVVV 130
Query: 392 AAGTG 406
+G
Sbjct: 131 DCVSG 135
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 35.5 bits (78), Expect = 0.041
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Frame = +2
Query: 62 THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLD 229
T I + V+G+V+SGKST G L Y G + + F E Q S + +
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170
Query: 230 KLKAE-RDWFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 400
E ++ A E S +T ID GH ++K I G + D A+L++A
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGN 230
Query: 401 TG 406
G
Sbjct: 231 AG 232
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 34.3 bits (75), Expect = 0.094
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 2/136 (1%)
Frame = +2
Query: 44 KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 217
K+ + + NI V+GHVDSGK++ L DK + ++G SF+ A
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87
Query: 218 WVLDKLKAERDWFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 397
+ + L++ E +T++D PGH IK +I G A +I
Sbjct: 88 -LPEHLRSAGS-----------EHDLLQMTLVDCPGHASLIKTIIGG------AQIIGEC 129
Query: 398 GTGEFEAGISKNGQTR 445
GT E G ++G+ +
Sbjct: 130 GT--IEGGFGQSGKVK 143
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 29.9 bits (64), Expect(2) = 0.19
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = +2
Query: 233 LKAERDWFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 397
++ E T I + + + +D PGH F G D +++VAA
Sbjct: 117 IEGESGGITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
Score = 22.2 bits (45), Expect(2) = 0.19
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +2
Query: 74 IVVIGHVDSGKSTTTGHL 127
+ V+GHVD GK++ ++
Sbjct: 94 VTVMGHVDHGKTSLLDYI 111
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 302 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +2
Query: 311 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 490
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 491 VGVNKM 508
+ NK+
Sbjct: 123 ILQNKI 128
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 308 IIDAPGHRDFIKNMITGTSQADCAVLIV 391
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 169
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 466 HPRCQTAHRRSKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 594
H + + RR ++N + + P+FE++K + +S KKI N
Sbjct: 109 HETTEPSVRRCQRNSVRDIDAAWPKFEKLKSQFNSNSKKISMN 151
>SB_59270| Best HMM Match : RVT_1 (HMM E-Value=7.8e-06)
Length = 509
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 134 KCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL-KAERDWFTIDIALWKFETSK 295
K GG+ R +E + A ++ KG+F+ + ++ AE DW+ +I + +T++
Sbjct: 311 KYGGLYYRNLELEKAHALKISKGNFESSMIISSQGMAELDWWVSNIDISFNDTNR 365
>SB_12560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 134 KCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL-KAERDWFTIDIALWKFETSK 295
K GG+ R +E + A ++ KG+F+ + ++ AE DW+ +I + +T++
Sbjct: 112 KYGGLYYRNLELEKAHALKISKGNFESSMIISSQGMAELDWWVSNIDISFNDTNR 166
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +1
Query: 511 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 651
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
>SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)
Length = 125
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +1
Query: 436 SNP*ACLARFHPRC-----QTAHRRSKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 594
+N A L RF C ++A RR ++N + + P+F+ +K + S KKI N
Sbjct: 25 NNEFAALKRFLKNCMHETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 82
>SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)
Length = 515
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 134 KCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL-KAERDWFTIDI 268
K GG+ R +E + A ++ KG+F+ + ++ AE DW+ +I
Sbjct: 187 KYGGLYYRNLEMEKAHALKISKGNFESSMIISSQGMAELDWWVNNI 232
>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 684 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 574
P+LEP + G L + S S GH+ D+ ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414
>SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 466 HPRCQTAHRRSKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 594
H ++A RR ++N + + P+F+ +K + S KKI N
Sbjct: 8 HETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 50
>SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)
Length = 515
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 134 KCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL-KAERDWFTIDI 268
K GG+ R +E + A ++ KG+F+ + ++ AE DW+ +I
Sbjct: 187 KYGGLYYRNLEMEKAHALKISKGNFESSMIISSQGMAELDWWVNNI 232
>SB_45850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 134 KCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL-KAERDWFTIDI 268
K GG+ R +E + A ++ KG+F+ + ++ AE DW+ +I
Sbjct: 71 KYGGLYYRNLEMEKAHALKISKGNFESSMIISSQGMAELDWWVNNI 116
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,779,486
Number of Sequences: 59808
Number of extensions: 460572
Number of successful extensions: 1455
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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