BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00297 (686 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 305 1e-83 U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 300 7e-82 U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 300 7e-82 U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 233 7e-62 Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 185 3e-47 Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 185 3e-47 Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 170 7e-43 U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 3e-33 D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 79 4e-15 D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 79 4e-15 AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 79 4e-15 U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 78 7e-15 AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 78 7e-15 M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 48 8e-06 Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 47 1e-05 L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 45 6e-05 AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 44 1e-04 Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 42 3e-04 Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 41 0.001 AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 40 0.002 Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 38 0.009 Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 34 0.11 Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 34 0.11 L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 34 0.11 AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.14 AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.58 U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 31 1.0 M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 31 1.0 DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.8 AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.4 AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.4 AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 29 2.4 AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.4 AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.4 Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.1 Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 7.2 AC024845-5|AAF60848.1| 719|Caenorhabditis elegans Hypothetical ... 28 7.2 AC024817-53|AAP13744.1| 549|Caenorhabditis elegans Hypothetical... 28 7.2 AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical... 28 7.2 Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 9.5 Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 9.5 AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 27 9.5 >U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor protein 4, isoformc protein. Length = 267 Score = 305 bits (750), Expect = 1e-83 Identities = 161/214 (75%), Positives = 167/214 (78%), Gaps = 1/214 (0%) Frame = +2 Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 226 MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60 Query: 227 DKLKAERD-WFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 403 DKLKAER+ TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120 Query: 404 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMIPLNHHTVSPDLRKSRRKYPHTSRR 583 GEFEAGISKNGQTREHALLA TLGVKQL + L T SPD +SRR Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQL-------VSLRSPTRSPD----------SSRR 163 Query: 584 LATTQLLSLSCPFLDGTETTCWSLQPKCLGSRDG 685 T Q L D TETTC C GSRDG Sbjct: 164 SDTIQRLFHLSQSPDSTETTCLRSPRTCHGSRDG 197 >U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor protein 4, isoforma protein. Length = 463 Score = 300 bits (736), Expect = 7e-82 Identities = 143/155 (92%), Positives = 147/155 (94%), Gaps = 1/155 (0%) Frame = +2 Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 226 MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60 Query: 227 DKLKAERD-WFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 403 DKLKAER+ TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120 Query: 404 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 508 GEFEAGISKNGQTREHALLA TLGVKQLIV NKM Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKM 155 Score = 103 bits (248), Expect = 9e-23 Identities = 45/59 (76%), Positives = 50/59 (84%) Frame = +1 Query: 508 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGW 684 DSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW Sbjct: 156 DSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGW 214 >U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor protein 3 protein. Length = 463 Score = 300 bits (736), Expect = 7e-82 Identities = 143/155 (92%), Positives = 147/155 (94%), Gaps = 1/155 (0%) Frame = +2 Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 226 MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60 Query: 227 DKLKAERD-WFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 403 DKLKAER+ TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120 Query: 404 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 508 GEFEAGISKNGQTREHALLA TLGVKQLIV NKM Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKM 155 Score = 103 bits (248), Expect = 9e-23 Identities = 45/59 (76%), Positives = 50/59 (84%) Frame = +1 Query: 508 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGW 684 DSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW Sbjct: 156 DSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGW 214 >U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor protein 4, isoformd protein. Length = 429 Score = 233 bits (571), Expect = 7e-62 Identities = 109/117 (93%), Positives = 113/117 (96%), Gaps = 1/117 (0%) Frame = +2 Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 226 MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60 Query: 227 DKLKAERD-WFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 394 DKLKAER+ TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117 Score = 103 bits (248), Expect = 9e-23 Identities = 45/59 (76%), Positives = 50/59 (84%) Frame = +1 Query: 508 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGW 684 DSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW Sbjct: 122 DSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGW 180 >Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical protein K07A12.4b protein. Length = 592 Score = 185 bits (450), Expect = 3e-47 Identities = 88/152 (57%), Positives = 111/152 (73%), Gaps = 1/152 (0%) Frame = +2 Query: 56 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 235 +K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+ Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226 Query: 236 KAERD-WFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 412 + ER+ T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 286 Query: 413 EAGISKNGQTREHALLAFTLGVKQLIVGVNKM 508 E G GQT+EHALL +LGV QLIV VNK+ Sbjct: 287 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKL 318 Score = 37.5 bits (83), Expect = 0.009 Identities = 17/53 (32%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Frame = +1 Query: 526 YSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 681 +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ G Sbjct: 323 WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWYDG 372 >Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical protein K07A12.4a protein. Length = 610 Score = 185 bits (450), Expect = 3e-47 Identities = 88/152 (57%), Positives = 111/152 (73%), Gaps = 1/152 (0%) Frame = +2 Query: 56 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 235 +K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+ Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244 Query: 236 KAERD-WFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 412 + ER+ T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 304 Query: 413 EAGISKNGQTREHALLAFTLGVKQLIVGVNKM 508 E G GQT+EHALL +LGV QLIV VNK+ Sbjct: 305 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKL 336 Score = 37.5 bits (83), Expect = 0.009 Identities = 17/53 (32%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Frame = +1 Query: 526 YSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 681 +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ G Sbjct: 341 WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWYDG 390 >Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical protein H19N07.1 protein. Length = 532 Score = 170 bits (414), Expect = 7e-43 Identities = 78/154 (50%), Positives = 109/154 (70%), Gaps = 1/154 (0%) Frame = +2 Query: 50 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 229 G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163 Query: 230 KLKAERD-WFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406 ER+ T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A G Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223 Query: 407 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 508 EFE G + GQTREH++L T GVK L++ VNKM Sbjct: 224 EFETGFDRGGQTREHSMLVKTAGVKHLVILVNKM 257 Score = 37.9 bits (84), Expect = 0.007 Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 3/65 (4%) Frame = +1 Query: 496 SKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPST--KM 666 +K +D T + E RF+EI+ +++ +++K+G+NP + +VP SG G + + T + Sbjct: 255 NKMDDPTVK-WEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSEG 313 Query: 667 PWFKG 681 W+ G Sbjct: 314 NWYSG 318 >U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor protein 4, isoformb protein. Length = 77 Score = 138 bits (335), Expect = 3e-33 Identities = 63/67 (94%), Positives = 64/67 (95%) Frame = +2 Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 226 MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60 Query: 227 DKLKAER 247 DKLK + Sbjct: 61 DKLKVTK 67 >D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor Tu homologueprecursor protein. Length = 495 Score = 78.6 bits (185), Expect = 4e-15 Identities = 55/157 (35%), Positives = 80/157 (50%), Gaps = 5/157 (3%) Frame = +2 Query: 53 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 223 ++K H+N+ IGHVD GK+T T ++ G R E + +E +G Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG------- 97 Query: 224 LDKLKAERDWFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 403 TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA Sbjct: 98 ----------ITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATD 147 Query: 404 GEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKM 508 G QTREH LLA +GV ++V +NK+ Sbjct: 148 GPMP-------QTREHLLLARQVGVPLDNIVVFMNKV 177 >D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor Tu homologueprecursor protein. Length = 496 Score = 78.6 bits (185), Expect = 4e-15 Identities = 55/157 (35%), Positives = 80/157 (50%), Gaps = 5/157 (3%) Frame = +2 Query: 53 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 223 ++K H+N+ IGHVD GK+T T ++ G R E + +E +G Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG------- 98 Query: 224 LDKLKAERDWFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 403 TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA Sbjct: 99 ----------ITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATD 148 Query: 404 GEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKM 508 G QTREH LLA +GV ++V +NK+ Sbjct: 149 GPMP-------QTREHLLLARQVGVPLDNIVVFMNKV 178 >AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation factor (ef-tu), mitochondrialprotein 1 protein. Length = 496 Score = 78.6 bits (185), Expect = 4e-15 Identities = 55/157 (35%), Positives = 80/157 (50%), Gaps = 5/157 (3%) Frame = +2 Query: 53 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 223 ++K H+N+ IGHVD GK+T T ++ G R E + +E +G Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG------- 98 Query: 224 LDKLKAERDWFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 403 TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA Sbjct: 99 ----------ITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATD 148 Query: 404 GEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKM 508 G QTREH LLA +GV ++V +NK+ Sbjct: 149 GPMP-------QTREHLLLARQVGVPLDNIVVFMNKV 178 >U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation factor (ef-tu), mitochondrialprotein 2 protein. Length = 439 Score = 77.8 bits (183), Expect = 7e-15 Identities = 54/149 (36%), Positives = 78/149 (52%) Frame = +2 Query: 59 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 238 K ++N+ IGH+D GK+T T + K+ K K E+ KG + Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQA---KKGFAKHIK-FDEIDKGK----------E 88 Query: 239 AERDWFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 418 ++ TI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E Sbjct: 89 EKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME- 147 Query: 419 GISKNGQTREHALLAFTLGVKQLIVGVNK 505 QT+EH +LA +GVK + + +NK Sbjct: 148 ------QTKEHLILAKQVGVKNMAIFINK 170 >AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial elongation factorTu homologue protein. Length = 439 Score = 77.8 bits (183), Expect = 7e-15 Identities = 54/149 (36%), Positives = 78/149 (52%) Frame = +2 Query: 59 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 238 K ++N+ IGH+D GK+T T + K+ K K E+ KG + Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQA---KKGFAKHIK-FDEIDKGK----------E 88 Query: 239 AERDWFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 418 ++ TI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E Sbjct: 89 EKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME- 147 Query: 419 GISKNGQTREHALLAFTLGVKQLIVGVNK 505 QT+EH +LA +GVK + + +NK Sbjct: 148 ------QTKEHLILAKQVGVKNMAIFINK 170 >M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor protein. Length = 852 Score = 47.6 bits (108), Expect = 8e-06 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 14/134 (10%) Frame = +2 Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 199 M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE + Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72 Query: 200 GSFKYAWVLDK-----LKAERDWFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 364 + + L+K +K E + T+++ K + + + + +ID+PGH DF + Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALG 132 Query: 365 QADCAVLIVAAGTG 406 D A+++V +G Sbjct: 133 VTDGALVVVDCVSG 146 >Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein F25H5.4 protein. Length = 852 Score = 47.2 bits (107), Expect = 1e-05 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 14/134 (10%) Frame = +2 Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 199 M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE + Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72 Query: 200 GSFKYAWVLDK-----LKAERDWFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 364 + + L+K +K E + T+++ K + + + + +ID+PGH DF + Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALR 132 Query: 365 QADCAVLIVAAGTG 406 D A+++V +G Sbjct: 133 VTDGALVVVDCVSG 146 >L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical protein ZK1236.1 protein. Length = 645 Score = 44.8 bits (101), Expect = 6e-05 Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 1/147 (0%) Frame = +2 Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 250 N ++ HVD GKST L+ CG + +K+ +LDKL+ ER+ Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85 Query: 251 -WFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 427 T+ Y + +ID PGH DF + + D +L+VAA G Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG------- 138 Query: 428 KNGQTREHALLAFTLGVKQLIVGVNKM 508 QT + LAF + Q+I +NK+ Sbjct: 139 VQAQTIANFWLAFEKNI-QIIPVINKI 164 >AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical protein Y119D3B.14 protein. Length = 689 Score = 43.6 bits (98), Expect = 1e-04 Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 1/113 (0%) Frame = +2 Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 250 NI VI HVD+GK+T T L+Y G I A + KG+ V D L ER+ Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73 Query: 251 -WFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406 T+ A + + + +ID PGH DF + D V+++ G Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126 >Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical protein F29C12.4 protein. Length = 750 Score = 42.3 bits (95), Expect = 3e-04 Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 1/113 (0%) Frame = +2 Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 250 NI + H+DSGK+T T ++Y G ID + +G +D + ER Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID----------SMHEVRGKDDVGATMDFMDLERQ 95 Query: 251 -WFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406 TI A + + IID PGH DF + D AVL++ G G Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147 >Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical protein C47B2.7b protein. Length = 500 Score = 40.7 bits (91), Expect = 0.001 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 1/165 (0%) Frame = +2 Query: 68 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 247 +N+ ++GHVDSGK+T T + + + F+ A D ++ Sbjct: 14 LNLGILGHVDSGKTTLTRRIA------ELGSTSAFDAHATST---------TTDGIRRN- 57 Query: 248 DWFTIDIALWKFET-SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 424 T+D+ + S + +ID PGH I+ ++ ++ D A++I+ + AGI Sbjct: 58 ---TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGI 109 Query: 425 SKNGQTREHALLAFTLGVKQLIVGVNKMIPLNHHTVSPDLRKSRR 559 QT EH LLA ++I+ +NK +S +K R+ Sbjct: 110 QP--QTAEHLLLASKFCPNRVIIVLNKCDLAEKSKISESAKKVRK 152 >AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis gtp-binding proteinprotein 1 protein. Length = 613 Score = 39.5 bits (88), Expect = 0.002 Identities = 52/179 (29%), Positives = 75/179 (41%), Gaps = 13/179 (7%) Frame = +2 Query: 23 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIEKFEKEAQEM 193 ++IRD P K+ + V+G+VD+GKST G L + G RT K E Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFES 185 Query: 194 GKGSFKYAWVLD-------KLKAERDWFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMI 352 G+ S +L K + +D + +K VT ID GH ++K I Sbjct: 186 GRTSSVGNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEKYLKTTI 244 Query: 353 TGTS--QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMIPLN 520 G + D +L++ A G G T+EH LA +L V L+V M P N Sbjct: 245 FGMTGHMPDYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLVVTKIDMCPAN 296 >Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical protein F46B6.6a protein. Length = 702 Score = 37.5 bits (83), Expect = 0.009 Identities = 27/69 (39%), Positives = 32/69 (46%) Frame = +2 Query: 302 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 481 VT +D PGH F G AD VL+VAA G E QT + A V Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257 Query: 482 QLIVGVNKM 508 QL+V VNK+ Sbjct: 258 QLVVAVNKI 266 >Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical protein F54D5.5b protein. Length = 492 Score = 33.9 bits (74), Expect = 0.11 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = +2 Query: 149 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERDWFTIDIALWKFETSKYYVTIIDAPGH 328 +KR ++ EKE + F Y LDK+K ERD + +++ K + + + DA H Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERDCYRKELSRCKKQLEAFQNSGYDAFHH 331 >Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical protein F54D5.5a protein. Length = 427 Score = 33.9 bits (74), Expect = 0.11 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = +2 Query: 149 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERDWFTIDIALWKFETSKYYVTIIDAPGH 328 +KR ++ EKE + F Y LDK+K ERD + +++ K + + + DA H Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERDCYRKELSRCKKQLEAFQNSGYDAFHH 266 >L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding protein protein. Length = 593 Score = 33.9 bits (74), Expect = 0.11 Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 13/170 (7%) Frame = +2 Query: 23 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIEKFEKEAQEM 193 ++IRD P K+ + V+G+VD+GKST G L + G RT K E Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFES 185 Query: 194 GKGSFKYAWVLD-------KLKAERDWFTIDIALWKFETSKYYVTIIDAPGHRDFIKNMI 352 G+ S +L K + +D + +K VT ID GH ++K I Sbjct: 186 GRTSSVGNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEIYLKTTI 244 Query: 353 TGTSQ---ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 493 G + + +L++ A G G T+EH LA +L V +V Sbjct: 245 FGMHRPYARNYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV 287 >AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical protein Y54G2A.28 protein. Length = 366 Score = 33.5 bits (73), Expect = 0.14 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = -3 Query: 504 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 376 LF PT+SC+ + AS S P + PA N VP AT+S + Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54 >AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical protein Y39G10AR.8 protein. Length = 469 Score = 31.5 bits (68), Expect = 0.58 Identities = 19/70 (27%), Positives = 31/70 (44%) Frame = +2 Query: 299 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 478 +V+ +D PGH + M+ G + D A L+VA QT EH + + Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181 Query: 479 KQLIVGVNKM 508 L++ NK+ Sbjct: 182 NHLMILQNKV 191 >U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor protein 1 protein. Length = 974 Score = 30.7 bits (66), Expect = 1.0 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = +2 Query: 260 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406 + I + Y + IID PGH +F M AD V++V A G Sbjct: 189 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237 >M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. Length = 849 Score = 30.7 bits (66), Expect = 1.0 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = +2 Query: 260 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406 + I + Y + IID PGH +F M AD V++V A G Sbjct: 64 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112 >DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic translation initiationfactor eIF5B protein. Length = 1074 Score = 29.9 bits (64), Expect = 1.8 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +2 Query: 308 IIDAPGHRDFIKNMITGTSQADCAVLIV 391 IID PGH F G+S D A+L+V Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580 >AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical protein H30A04.1b protein. Length = 810 Score = 29.5 bits (63), Expect = 2.4 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +2 Query: 566 PHTSRRLATTQLLSLSCPFLD 628 PH SR T L+ SCPFLD Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178 >AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical protein H30A04.1a protein. Length = 808 Score = 29.5 bits (63), Expect = 2.4 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +2 Query: 566 PHTSRRLATTQLLSLSCPFLD 628 PH SR T L+ SCPFLD Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178 >AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical protein W05F2.7 protein. Length = 1424 Score = 29.5 bits (63), Expect = 2.4 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = -2 Query: 352 DHVLDEISVSRSINDGNIVLASFELPESNIDCEPVTLSL*FVQYPSIFEGSFTHF 188 DH+ EIS S N + + S + SN P T ++ +Y F+GSF+ F Sbjct: 49 DHITYEISTSPPSNSFDQISDSIRILLSNQSSCPETCTVTLNRYIDTFQGSFSIF 103 >AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. Length = 810 Score = 29.5 bits (63), Expect = 2.4 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +2 Query: 566 PHTSRRLATTQLLSLSCPFLD 628 PH SR T L+ SCPFLD Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178 >AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. Length = 808 Score = 29.5 bits (63), Expect = 2.4 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +2 Query: 566 PHTSRRLATTQLLSLSCPFLD 628 PH SR T L+ SCPFLD Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178 >Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical protein C47B2.7a protein. Length = 459 Score = 28.7 bits (61), Expect = 4.1 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = +2 Query: 68 INIVVIGHVDSGKSTTT 118 +N+ ++GHVDSGK+T T Sbjct: 14 LNLGILGHVDSGKTTLT 30 >Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical protein D1081.4 protein. Length = 381 Score = 27.9 bits (59), Expect = 7.2 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%) Frame = +2 Query: 302 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 397 V IID+ G RDFI KN+ GT AD +++ AA Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104 >AC024845-5|AAF60848.1| 719|Caenorhabditis elegans Hypothetical protein Y65B4BL.5 protein. Length = 719 Score = 27.9 bits (59), Expect = 7.2 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 1/78 (1%) Frame = -3 Query: 432 FLEIPASNSPVPAATMSTAQSA*EVPVIMFLMKSLCP-GASMMVT*YLLVSNFQRAISIV 256 F+ P SNS +P A +A + + +L KS S + N + + + Sbjct: 20 FISAPNSNSSLPPYVQIGAAAAVTMGLGYYLSKSSSSTSGSYSFSGVTYSGNVKPLVDPM 79 Query: 255 NQSRSAFSLSNTQAYLKD 202 NQSR S AYLKD Sbjct: 80 NQSRILPDGSRISAYLKD 97 >AC024817-53|AAP13744.1| 549|Caenorhabditis elegans Hypothetical protein Y54G2A.26b protein. Length = 549 Score = 27.9 bits (59), Expect = 7.2 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +1 Query: 484 AHRRSKQNDSTEPPYSEPRFEEIKKEV 564 AHRR K ND + P YS E++ V Sbjct: 124 AHRRKKHNDLSSPRYSSNSNEDVDGSV 150 >AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical protein Y54G2A.26a protein. Length = 611 Score = 27.9 bits (59), Expect = 7.2 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +1 Query: 484 AHRRSKQNDSTEPPYSEPRFEEIKKEV 564 AHRR K ND + P YS E++ V Sbjct: 186 AHRRKKHNDLSSPRYSSNSNEDVDGSV 212 >Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical protein K10C3.5b protein. Length = 705 Score = 27.5 bits (58), Expect = 9.5 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = +2 Query: 302 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 391 + +ID+PGH DF + + +D A+L++ Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114 >Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical protein K10C3.5a protein. Length = 894 Score = 27.5 bits (58), Expect = 9.5 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = +2 Query: 302 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 391 + +ID+PGH DF + + +D A+L++ Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114 >AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical protein F14D2.15 protein. Length = 299 Score = 27.5 bits (58), Expect = 9.5 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%) Frame = -2 Query: 487 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 329 E + +E E G+ L V RD F + +GTGS + H ++R DH + + Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83 Query: 328 VSRSINDGNI 299 S S +D I Sbjct: 84 FSGSKSDAEI 93 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,132,122 Number of Sequences: 27780 Number of extensions: 344322 Number of successful extensions: 1104 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 1007 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1087 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1571291122 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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