Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00296
(348 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch... 46 1e-06
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 25 3.4
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 4.4
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 4.4
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 4.4
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 24 5.9
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 24 5.9
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 24 5.9
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 24 7.8
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 24 7.8
>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
Usp106|Schizosaccharomyces pombe|chr 3|||Manual
Length = 264
Score = 46.4 bits (105), Expect = 1e-06
Identities = 27/84 (32%), Positives = 42/84 (50%)
Frame = +2
Query: 2 DYEIASKTKDYFYDIDATEHLEAFIADCDRRTTAAKQRLAETQEELSAEVTEKANAVHEL 181
DYE AS + DY Y+ D E LE + DC++R A+ R +T+EE + E +
Sbjct: 68 DYERASYSHDYGYEWDYLEDLERHVDDCNKRIDIAEARREKTKEE-EERIDELMRDIIHT 126
Query: 182 AEQIGQKLARAEALGEEGMVEESV 253
I + EAL + +V ++V
Sbjct: 127 DHSIEVIITEMEALAKRKLVNDAV 150
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 25.0 bits (52), Expect = 3.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 2 DYEIASKTKDYFYDI 46
D+ + SK +DYFYD+
Sbjct: 319 DFLVPSKIQDYFYDV 333
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 24.6 bits (51), Expect = 4.4
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -3
Query: 226 SECLSPSQFLPYLLCQFMNSIGF-LRHF 146
SE LS S F P L MNSI RHF
Sbjct: 644 SETLSNSSFFPQALKAHMNSISSPKRHF 671
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 24.6 bits (51), Expect = 4.4
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = +2
Query: 38 YDIDATEHLEAFIADCDRRTTAAKQRLAETQEELSAEVTEKANAVHELAEQIGQKLARAE 217
+DID+ + L + IAD R + L + ++ L + +NA+ E + + L +
Sbjct: 473 HDIDS-QKLNSEIADLSLRLQQEELSLDDIRKSLQGKTEGISNAIEEKQKAMAPALEKIN 531
Query: 218 ALGEEGMV 241
L E +
Sbjct: 532 QLTSEKQI 539
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 24.6 bits (51), Expect = 4.4
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 104 AKQRLAETQEELSAEVTEKANAVHELAEQIGQKLARAEALGEEGMVEESV 253
A Q L + Q+ L E +HE++EQ+ +K + +E +E+ V
Sbjct: 1840 ANQTLRKDQDTLLRENRNLERKLHEVSEQLNKKFDSSARPFDEIEMEKEV 1889
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 24.2 bits (50), Expect = 5.9
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -3
Query: 268 SLPLIDTLLDHTLFSECLSPSQFLPYLLCQFMNSIGFLRH 149
S P++ ++D CL+ + LP +++ FLRH
Sbjct: 3931 SEPMVIQIVDKFEARSCLNQIKILPSRFTNIEDTLRFLRH 3970
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 24.2 bits (50), Expect = 5.9
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Frame = +2
Query: 47 DATEHLEAFIADCDRRTTAAKQRLAETQEELSA---------EVTEKANAVHELAEQ 190
+A E LE +++ AAKQR+ +EE + TEK NA+ E+ EQ
Sbjct: 342 NAQEKLEHEQHSRNQKLEAAKQRMDNIREEYKVITQERNKKIQETEKKNAMIEMTEQ 398
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 24.2 bits (50), Expect = 5.9
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = -2
Query: 233 PLLRVPQPEPVSALFALPIHEQHW 162
P++ P+ ++ L +LP HW
Sbjct: 2232 PMMYFSNPQEIALLLSLPSSNNHW 2255
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 23.8 bits (49), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 2 DYEIASKTKDYFYDIDATEHLEA 70
D E + TKD F+D+DA ++ A
Sbjct: 556 DDEEETNTKDEFFDVDAHDNNHA 578
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 23.8 bits (49), Expect = 7.8
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 65 EAFIADCDRRTTAAKQRLAETQEELSAEVTEKANA-VHELAEQIGQK 202
E IA + + R +E QE+ S + EKA A +++ Q G +
Sbjct: 193 EQRIAMLEESLEVERSRTSELQEQFSVALREKAEAEANKIVSQKGME 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,186,679
Number of Sequences: 5004
Number of extensions: 17858
Number of successful extensions: 51
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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