Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00296
(348 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical pr... 58 1e-09
U70848-4|AAB09108.1| 869|Caenorhabditis elegans Hypothetical pr... 30 0.52
U56964-1|AAB54033.2| 555|Caenorhabditis elegans Twik family of ... 28 1.6
AF083645-1|AAC32856.1| 555|Caenorhabditis elegans potassium cha... 28 1.6
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 2.1
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 28 2.1
AF000263-13|AAO21393.1| 695|Caenorhabditis elegans Hypothetical... 27 2.8
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 27 2.8
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 27 2.8
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 27 2.8
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 27 2.8
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 27 3.7
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 27 3.7
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 27 3.7
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 27 3.7
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 27 3.7
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 27 3.7
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 27 3.7
AL132877-6|CAE54913.1| 151|Caenorhabditis elegans Hypothetical ... 27 3.7
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 27 3.7
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 27 3.7
AL034488-14|CAE11311.1| 341|Caenorhabditis elegans Hypothetical... 27 4.9
AF100655-10|ABO16451.1| 246|Caenorhabditis elegans Hypothetical... 27 4.9
U41528-2|AAK39168.1| 125|Caenorhabditis elegans Hypothetical pr... 26 6.4
AF100655-8|ABO16452.1| 470|Caenorhabditis elegans Hypothetical ... 26 6.4
AF100655-6|ABO16453.1| 470|Caenorhabditis elegans Hypothetical ... 26 6.4
AF100655-4|ABO16447.1| 470|Caenorhabditis elegans Hypothetical ... 26 6.4
AF045643-2|AAC02596.2| 663|Caenorhabditis elegans Hypothetical ... 26 6.4
Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical p... 26 8.5
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 26 8.5
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 26 8.5
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 26 8.5
AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein. 26 8.5
>U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical
protein B0495.8a protein.
Length = 313
Score = 58.4 bits (135), Expect = 1e-09
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 DYEIASKTKDYFYDIDATEHLEAFIADCDRRTTAAKQRLA-ETQEELSAEVTEKANAVHE 178
DYE A K KD+FYD+DA E +E + D +++L + + + S KA V E
Sbjct: 69 DYERAQKEKDHFYDVDAFEIIEHAVHLVDIEIAKVREKLEDDVKTQTSQAADSKAKQVAE 128
Query: 179 LAEQIGQKLARAEALGEEGMVEESV 253
+ E+I + + E LG EG +EES+
Sbjct: 129 IEEKIAKNVDDIEKLGNEGKIEESM 153
>U70848-4|AAB09108.1| 869|Caenorhabditis elegans Hypothetical
protein C43G2.2 protein.
Length = 869
Score = 29.9 bits (64), Expect = 0.52
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 89 RRTTAAKQRLAETQEELSAEVTEKANAVHELAEQIG--QKLARAEALGEEGMVEES 250
R+ ++RLAE Q EL TE LAE Q+ R+E EE ++EES
Sbjct: 39 RQKEDLEKRLAEMQAELDLARTEIDKTNQTLAEYRSQHQRSTRSELENEESLLEES 94
>U56964-1|AAB54033.2| 555|Caenorhabditis elegans Twik family of
potassium channelsprotein 16 protein.
Length = 555
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Frame = +2
Query: 119 AETQEELSAEVTEKANAVHELAEQIGQKLARAEALGEEGMVEESVN*WER------LTNS 280
A+T+ + + + +H + ++ G + +AL E +VE ++ E L +
Sbjct: 291 AQTRIWFGGKTLKVRDLLHAVGKKCGVEPGMIDALDLENVVERTIAMQEGREPPEDLNDE 350
Query: 281 AKRKLSPSKTIVIPCPLRPTN 343
R+ SP I PC RP+N
Sbjct: 351 PPREPSPRSIIHSPCSTRPSN 371
>AF083645-1|AAC32856.1| 555|Caenorhabditis elegans potassium
channel subunit n2P16 protein.
Length = 555
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Frame = +2
Query: 119 AETQEELSAEVTEKANAVHELAEQIGQKLARAEALGEEGMVEESVN*WER------LTNS 280
A+T+ + + + +H + ++ G + +AL E +VE ++ E L +
Sbjct: 291 AQTRIWFGGKTLKVRDLLHAVGKKCGVEPGMIDALDLENVVERTIAMQEGREPPEDLNDE 350
Query: 281 AKRKLSPSKTIVIPCPLRPTN 343
R+ SP I PC RP+N
Sbjct: 351 PPREPSPRSIIHSPCSTRPSN 371
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 80 DCDRRTTAAKQRLAETQEELSAEVTEKANAVHELAEQIGQKLAR 211
DC R T A + + QE+L AEV + + ++ Q G+ + R
Sbjct: 1587 DCGRTLTEALN-MVKKQEQLEAEVNQHGGQIDKVLLQAGELIKR 1629
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 80 DCDRRTTAAKQRLAETQEELSAEVTEKANAVHELAEQIGQKLAR 211
DC R T A + + QE+L AEV + + ++ Q G+ + R
Sbjct: 1587 DCGRTLTEALN-MVKKQEQLEAEVNQHGGQIDKVLLQAGELIKR 1629
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 80 DCDRRTTAAKQRLAETQEELSAEVTEKANAVHELAEQIGQKLAR 211
DC R T A + + QE+L AEV + + ++ Q G+ + R
Sbjct: 1587 DCGRTLTEALN-MVKKQEQLEAEVNQHGGQIDKVLLQAGELIKR 1629
>AF000263-13|AAO21393.1| 695|Caenorhabditis elegans Hypothetical
protein T08B2.5g protein.
Length = 695
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 125 TQEELSAEVTEKANAVHELAEQIGQ 199
T E++A KANAV + ++Q+GQ
Sbjct: 243 TGAEIAAAALSKANAVRQASQQVGQ 267
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 125 TQEELSAEVTEKANAVHELAEQIGQ 199
T E++A KANAV + ++Q+GQ
Sbjct: 386 TGAEIAAAALSKANAVRQASQQVGQ 410
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 125 TQEELSAEVTEKANAVHELAEQIGQ 199
T E++A KANAV + ++Q+GQ
Sbjct: 414 TGAEIAAAALSKANAVRQASQQVGQ 438
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 125 TQEELSAEVTEKANAVHELAEQIGQ 199
T E++A KANAV + ++Q+GQ
Sbjct: 472 TGAEIAAAALSKANAVRQASQQVGQ 496
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 125 TQEELSAEVTEKANAVHELAEQIGQ 199
T E++A KANAV + ++Q+GQ
Sbjct: 473 TGAEIAAAALSKANAVRQASQQVGQ 497
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 56 EHLEAFIADCDRRTTAAKQRLAETQEELSAEVTEKANAVHELAEQIGQKL 205
+HL + D + T + L +T ++L TE+ NA+ +++ Q+L
Sbjct: 1401 DHLNQLASQFDTKLTKLRNELQDTNDKLITSDTER-NALRNELQKLSQEL 1449
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 56 EHLEAFIADCDRRTTAAKQRLAETQEELSAEVTEKANAVHELAEQIGQKL 205
+HL + D + T + L +T ++L TE+ NA+ +++ Q+L
Sbjct: 1474 DHLNQLASQFDTKLTKLRNELQDTNDKLITSDTER-NALRNELQKLSQEL 1522
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 56 EHLEAFIADCDRRTTAAKQRLAETQEELSAEVTEKANAVHELAEQIGQKL 205
+HL + D + T + L +T ++L TE+ NA+ +++ Q+L
Sbjct: 1474 DHLNQLASQFDTKLTKLRNELQDTNDKLITSDTER-NALRNELQKLSQEL 1522
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 27.1 bits (57), Expect = 3.7
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +2
Query: 56 EHLEAFIADCDRRTTAAKQRLAETQEELSA---EVTEKANAVHELAEQIGQKLARAEALG 226
E +E + D ++ T L + QE+LSA ++ EK V E ++ R L
Sbjct: 37 ERVEEELRDTQKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLE 96
Query: 227 EE 232
EE
Sbjct: 97 EE 98
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 27.1 bits (57), Expect = 3.7
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +2
Query: 56 EHLEAFIADCDRRTTAAKQRLAETQEELSA---EVTEKANAVHELAEQIGQKLARAEALG 226
E +E + D ++ T L + QE+LSA ++ EK V E ++ R L
Sbjct: 37 ERVEEELRDTQKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLE 96
Query: 227 EE 232
EE
Sbjct: 97 EE 98
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 27.1 bits (57), Expect = 3.7
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +2
Query: 56 EHLEAFIADCDRRTTAAKQRLAETQEELSA---EVTEKANAVHELAEQIGQKLARAEALG 226
E +E + D ++ T L + QE+LSA ++ EK V E ++ R L
Sbjct: 37 ERVEEELRDTQKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLE 96
Query: 227 EE 232
EE
Sbjct: 97 EE 98
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 27.1 bits (57), Expect = 3.7
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +2
Query: 56 EHLEAFIADCDRRTTAAKQRLAETQEELSA---EVTEKANAVHELAEQIGQKLARAEALG 226
E +E + D ++ T L + QE+LSA ++ EK V E ++ R L
Sbjct: 37 ERVEEELRDTQKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLE 96
Query: 227 EE 232
EE
Sbjct: 97 EE 98
>AL132877-6|CAE54913.1| 151|Caenorhabditis elegans Hypothetical
protein Y105E8B.1f protein.
Length = 151
Score = 27.1 bits (57), Expect = 3.7
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +2
Query: 56 EHLEAFIADCDRRTTAAKQRLAETQEELSA---EVTEKANAVHELAEQIGQKLARAEALG 226
E +E + D ++ T L + QE+LSA ++ EK V E ++ R L
Sbjct: 37 ERVEEELRDTQKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLE 96
Query: 227 EE 232
EE
Sbjct: 97 EE 98
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 27.1 bits (57), Expect = 3.7
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +2
Query: 56 EHLEAFIADCDRRTTAAKQRLAETQEELSA---EVTEKANAVHELAEQIGQKLARAEALG 226
E +E + D ++ T L + QE+LSA ++ EK V E ++ R L
Sbjct: 37 ERVEEELRDTQKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLE 96
Query: 227 EE 232
EE
Sbjct: 97 EE 98
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 27.1 bits (57), Expect = 3.7
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +2
Query: 56 EHLEAFIADCDRRTTAAKQRLAETQEELSA---EVTEKANAVHELAEQIGQKLARAEALG 226
E +E + D ++ T L + QE+LSA ++ EK V E ++ R L
Sbjct: 37 ERVEEELRDTQKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLE 96
Query: 227 EE 232
EE
Sbjct: 97 EE 98
>AL034488-14|CAE11311.1| 341|Caenorhabditis elegans Hypothetical
protein Y54G11A.15 protein.
Length = 341
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -2
Query: 236 YPLLRVPQPEPVSALFALP 180
+ +LR+P+P+P+S L ++P
Sbjct: 313 HKILRLPEPKPISTLASIP 331
>AF100655-10|ABO16451.1| 246|Caenorhabditis elegans Hypothetical
protein C44C8.7 protein.
Length = 246
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +2
Query: 11 IASKTKDYFYDIDATEHLEAFIADCDRRTTAAKQRLAETQEELSAEVTEKANAVHEL 181
+A++ KD+ +DID T H +A + D E E TE + + E+
Sbjct: 89 VANRKKDFQFDIDPTNHPDASEIEQDPNEILIDNVRRYRAPEHEGEPTELSRLMEEI 145
>U41528-2|AAK39168.1| 125|Caenorhabditis elegans Hypothetical
protein C15C7.5 protein.
Length = 125
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/61 (21%), Positives = 28/61 (45%)
Frame = +2
Query: 8 EIASKTKDYFYDIDATEHLEAFIADCDRRTTAAKQRLAETQEELSAEVTEKANAVHELAE 187
E+ +T++ +HL +++ + R A R+ ET ++ E ++ + HE
Sbjct: 38 EVTEETEEIRKLDTQLDHLNDYMSKMEERLKAHNDRMMETLKQQKEEREKRRRSFHERMS 97
Query: 188 Q 190
Q
Sbjct: 98 Q 98
>AF100655-8|ABO16452.1| 470|Caenorhabditis elegans Hypothetical
protein C44C8.8 protein.
Length = 470
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +2
Query: 11 IASKTKDYFYDIDATEHLEAFIADCDRRTTAAKQRLAETQEELSAEVTEKANAVHEL 181
+A++ KD+ +DID T H +A + D E E TE + + E+
Sbjct: 89 VANRKKDFQFDIDPTNHPDASEIEQDPNEILIDNVRRYRAPEHEGEPTELSRFMEEI 145
>AF100655-6|ABO16453.1| 470|Caenorhabditis elegans Hypothetical
protein C44C8.9 protein.
Length = 470
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +2
Query: 11 IASKTKDYFYDIDATEHLEAFIADCDRRTTAAKQRLAETQEELSAEVTEKANAVHEL 181
+A++ KD+ +DID T H +A + D E E TE + + E+
Sbjct: 89 VANRKKDFQFDIDPTNHPDASEIEQDPNEILIDNVRRYRAPEHEGEPTELSRFMEEI 145
>AF100655-4|ABO16447.1| 470|Caenorhabditis elegans Hypothetical
protein C44C8.10 protein.
Length = 470
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +2
Query: 11 IASKTKDYFYDIDATEHLEAFIADCDRRTTAAKQRLAETQEELSAEVTEKANAVHEL 181
+A++ KD+ +DID T H +A + D E E TE + + E+
Sbjct: 89 VANRKKDFQFDIDPTNHPDASEIEQDPNEILIDNVRRYRAPEHEGEPTELSRFMEEI 145
>AF045643-2|AAC02596.2| 663|Caenorhabditis elegans Hypothetical
protein F58H7.7 protein.
Length = 663
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +2
Query: 11 IASKTKDYFYDIDATEHLEAFIADCDRRTTAAKQRLAETQEELSAEVTEKANAVHEL 181
+A++ KD+ +DID T H +A + D E E TE + + E+
Sbjct: 89 VANRKKDFQFDIDPTNHPDASEIEQDPNEILIDNVRRYRAPEHEGEPTELSRFMEEI 145
>Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical
protein T09A5.10 protein.
Length = 821
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 131 EELSAEVTEKANAVHELAEQIGQKLARAEALGEEGMVEESVN*WERLTNSAK 286
EELS ++ K + VH + +Q+ + +R E+ +EE+ E LT K
Sbjct: 276 EELSCDLEAKKDEVHNILQQLNE--SRMTLRSEQRSLEEADIKKENLTAKLK 325
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +2
Query: 101 AAKQRLAETQEELSAEVTEKANAVHELAEQIGQKLARAEALGEEGMVEESVN*WERLTNS 280
A KQ+ + +++L AE+T K +A + + KL +A + +E + T +
Sbjct: 9807 ARKQKETDEKQKLEAEITAKKSADEKSKLEAESKLKKAAEVEAAKKQKEKDEQLKLDTEA 9866
Query: 281 AKRKLSPSK 307
A +K + K
Sbjct: 9867 ASKKAAAEK 9875
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +2
Query: 101 AAKQRLAETQEELSAEVTEKANAVHELAEQIGQKLARAEALGEEGMVEESVN*WERLTNS 280
A KQ+ + +++L AE+T K +A + + KL +A + +E + T +
Sbjct: 9827 ARKQKETDEKQKLEAEITAKKSADEKSKLEAESKLKKAAEVEAAKKQKEKDEQLKLDTEA 9886
Query: 281 AKRKLSPSK 307
A +K + K
Sbjct: 9887 ASKKAAAEK 9895
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +2
Query: 101 AAKQRLAETQEELSAEVTEKANAVHELAEQIGQKLARAEALGEEGMVEESVN*WERLTNS 280
A KQ+ + +++L AE+T K +A + + KL +A + +E + T +
Sbjct: 13460 ARKQKETDEKQKLEAEITAKKSADEKSKLEAESKLKKAAEVEAAKKQKEKDEQLKLDTEA 13519
Query: 281 AKRKLSPSK 307
A +K + K
Sbjct: 13520 ASKKAAAEK 13528
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +2
Query: 101 AAKQRLAETQEELSAEVTEKANAVHELAEQIGQKLARAEALGEEGMVEESVN*WERLTNS 280
A KQ+ + +++L AE+T K +A + + KL +A + +E + T +
Sbjct: 9827 ARKQKETDEKQKLEAEITAKKSADEKSKLEAESKLKKAAEVEAAKKQKEKDEQLKLDTEA 9886
Query: 281 AKRKLSPSK 307
A +K + K
Sbjct: 9887 ASKKAAAEK 9895
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +2
Query: 101 AAKQRLAETQEELSAEVTEKANAVHELAEQIGQKLARAEALGEEGMVEESVN*WERLTNS 280
A KQ+ + +++L AE+T K +A + + KL +A + +E + T +
Sbjct: 13460 ARKQKETDEKQKLEAEITAKKSADEKSKLEAESKLKKAAEVEAAKKQKEKDEQLKLDTEA 13519
Query: 281 AKRKLSPSK 307
A +K + K
Sbjct: 13520 ASKKAAAEK 13528
>AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein.
Length = 821
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 131 EELSAEVTEKANAVHELAEQIGQKLARAEALGEEGMVEESVN*WERLTNSAK 286
EELS ++ K + VH + +Q+ + +R E+ +EE+ E LT K
Sbjct: 276 EELSCDLEAKKDEVHNILQQLNE--SRMTLRSEQRSLEEADIKKENLTAKLK 325
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,683,611
Number of Sequences: 27780
Number of extensions: 102346
Number of successful extensions: 394
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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