Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00295
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.10c |tif512||translation initiation factor|Schizosacchar...   118   1e-27
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...   118   1e-27
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   3.8  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    27   3.8  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    26   6.6  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   8.8  

>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score =  118 bits (283), Expect = 1e-27
 Identities = 52/76 (68%), Positives = 62/76 (81%)
 Frame = +3

Query: 51  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 230
           M + E   FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60

Query: 231 VGIDIFNGKSMKISVP 278
           V +DIFNG+  +   P
Sbjct: 61  VALDIFNGRKYEDMSP 76



 Score = 93.9 bits (223), Expect = 2e-20
 Identities = 39/74 (52%), Positives = 58/74 (78%)
 Frame = +2

Query: 257 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD 436
           KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM  +G  ++D+++P+G+LG ++   
Sbjct: 70  KYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEIEEG 128

Query: 437 FDSGKELLCTVLKS 478
           F+ GK+L+ TV+ +
Sbjct: 129 FEEGKDLIITVVSA 142


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score =  118 bits (283), Expect = 1e-27
 Identities = 52/76 (68%), Positives = 62/76 (81%)
 Frame = +3

Query: 51  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 230
           M + E   FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60

Query: 231 VGIDIFNGKSMKISVP 278
           V +DIFNG+  +   P
Sbjct: 61  VALDIFNGRKYEDMSP 76



 Score = 94.3 bits (224), Expect = 2e-20
 Identities = 39/74 (52%), Positives = 58/74 (78%)
 Frame = +2

Query: 257 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD 436
           KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM  +G  ++D+++P+G+LG ++   
Sbjct: 70  KYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEIEEG 128

Query: 437 FDSGKELLCTVLKS 478
           FD G++L+ TV+ +
Sbjct: 129 FDEGRDLIITVVSA 142


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 287  NMDVPHVKREDYQLTDISDDGYL 355
            NM +P+++ E  Q+ D + D YL
Sbjct: 968  NMSIPYIRGEYVQMIDANQDNYL 990


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 143 FRYAEGSSMQDC*NVHIQNRKARPR*SSLGWD 238
           + + E   +Q C N+  +N +A  R SS GWD
Sbjct: 41  YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -2

Query: 558 VNPINAELVYL--SRAVFA*RR*RTPHRQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSS 385
           V+P NA++V +     +   +   T H  D  +VHN   P+S S    V  S S + R+ 
Sbjct: 612 VDPNNADIVEMVERNGIVVPKVTVTSHEDDVDSVHNT--PMSVSSTLSVKTSSSKVPRNK 669

Query: 384 RR 379
           R+
Sbjct: 670 RK 671


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 305 VKREDYQLTDISDDGYL 355
           +KREDY+LT  ++ GYL
Sbjct: 91  IKREDYELTLCANCGYL 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,201,934
Number of Sequences: 5004
Number of extensions: 67153
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)