Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00295
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 111 4e-25
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 102 3e-22
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 94 1e-19
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 88 1e-18
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 52 4e-07
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 33 0.32
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 32 0.56
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 30 1.7
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 30 2.3
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 29 3.0
08_02_0610 + 19307537-19308011,19308187-19310846 28 6.9
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849... 28 6.9
03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068 28 6.9
08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695 28 9.2
08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476... 28 9.2
05_01_0297 - 2314687-2316021 28 9.2
04_01_0031 + 381389-381841 28 9.2
02_05_0402 + 28687597-28687671,28688123-28688235,28688927-286894... 28 9.2
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 111 bits (268), Expect = 4e-25
Identities = 48/77 (62%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Frame = +3
Query: 51 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVH 227
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGHAK H
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 228 LVGIDIFNGKSMKISVP 278
VGIDIFNGK ++ VP
Sbjct: 61 FVGIDIFNGKKLEDIVP 77
Score = 83.4 bits (197), Expect = 2e-16
Identities = 36/76 (47%), Positives = 57/76 (75%), Gaps = 2/76 (2%)
Frame = +2
Query: 257 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRT 433
K EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G+ ++DL++P D L Q++
Sbjct: 71 KLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDDTLTNQIKN 130
Query: 434 DF-DSGKELLCTVLKS 478
F + GK+++ TV+ +
Sbjct: 131 GFGEEGKDMILTVMSA 146
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 102 bits (245), Expect = 3e-22
Identities = 47/81 (58%), Positives = 60/81 (74%), Gaps = 5/81 (6%)
Frame = +3
Query: 51 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK----IVEMSTSKTGKHGH 215
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK +VE+STSKTGKHGH
Sbjct: 14 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHGH 73
Query: 216 AKVHLVGIDIFNGKSMKISVP 278
AK H V IDIFNGK ++ VP
Sbjct: 74 AKCHFVAIDIFNGKKLEDIVP 94
Score = 86.6 bits (205), Expect = 2e-17
Identities = 37/75 (49%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Frame = +2
Query: 257 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRT 433
K EDI PS+HN DVPHV R +YQL DIS+DG+++L+ ++G+ ++DL++P D L Q++T
Sbjct: 88 KLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPTDDSLLGQIKT 147
Query: 434 DFDSGKELLCTVLKS 478
F GK+L+ TV+ +
Sbjct: 148 GFGEGKDLVVTVMSA 162
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 93.9 bits (223), Expect = 1e-19
Identities = 47/90 (52%), Positives = 59/90 (65%), Gaps = 14/90 (15%)
Frame = +3
Query: 51 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK-------------IVEMS 188
M D E+ HFE+ D+GAS T+P Q +RKNG +++K RPCK +VE+S
Sbjct: 1323 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVS 1382
Query: 189 TSKTGKHGHAKVHLVGIDIFNGKSMKISVP 278
TSKTGKHGHAK H V IDIFNGK ++ VP
Sbjct: 1383 TSKTGKHGHAKCHFVAIDIFNGKKLEDIVP 1412
Score = 86.6 bits (205), Expect = 2e-17
Identities = 38/75 (50%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Frame = +2
Query: 257 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRT 433
K EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G ++DL++P D L TQ++
Sbjct: 1406 KLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLPSDEALLTQIKD 1465
Query: 434 DFDSGKELLCTVLKS 478
F GK+L+ TV+ +
Sbjct: 1466 GFAEGKDLIVTVMSA 1480
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 87.8 bits (208), Expect = 8e-18
Identities = 37/75 (49%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Frame = +2
Query: 257 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRT 433
K EDI PS+HN DVPHV R +YQL DIS+DG+++L+ +NG+ ++DL++P D +L +Q++
Sbjct: 103 KLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLSQIKD 162
Query: 434 DFDSGKELLCTVLKS 478
F GK+L+ TV+ +
Sbjct: 163 GFGEGKDLVVTVMSA 177
Score = 55.6 bits (128), Expect(2) = 1e-18
Identities = 24/36 (66%), Positives = 28/36 (77%)
Frame = +3
Query: 171 KIVEMSTSKTGKHGHAKVHLVGIDIFNGKSMKISVP 278
K+VE+STSKTGKHGHAK H V IDIF K ++ VP
Sbjct: 74 KVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVP 109
Score = 55.2 bits (127), Expect(2) = 1e-18
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +3
Query: 51 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK 173
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCK 42
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 52.4 bits (120), Expect = 4e-07
Identities = 24/61 (39%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Frame = +2
Query: 302 HVKREDYQLTDISDDG-YLTLMADNGDLREDLKIPDGD-LGTQLRTDFDSGKELLCTVLK 475
H+ R +YQL DIS+DG +++L+ ++G+ ++DL +P D L Q++T F GK+++ TV+
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMS 105
Query: 476 S 478
+
Sbjct: 106 A 106
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 91 PGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKPE 204
P PQPP PC PC K C + C PKP+
Sbjct: 81 PLPQPPPPCKPPPCEKPPEDC-KPKPCHCCSCEKPKPK 117
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 31.9 bits (69), Expect = 0.56
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Frame = +2
Query: 293 DVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDL---GTQLRTDF----DSGK 451
D P+ RE +++ ++ D Y+T D+G L ED+K+ G+ G Q+ + +SG+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGNSPKDGQQVIFHYVGYNESGR 95
Query: 452 ELLCTVLKSWR*GVR 496
+ T ++ + G+R
Sbjct: 96 RIDSTYIQGFEEGIR 110
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +3
Query: 12 HIIPDRC*IQNTTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMS 188
H+ +Q ++ D E H T +ATFPM L N + +GR CK V +S
Sbjct: 423 HVADPTSLVQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVS 481
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 52 WVTSKTHTLRPETPGPQPPSPCNV 123
W+T T P+ P P PP PC+V
Sbjct: 52 WLTWPPPTPLPDAPPPPPPHPCDV 75
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 1 PVGHISFLTVVKFKTQQWVTSKTHTLRPETPGPQP-PSPCNVRPCVK 138
P+G S T+ + W + H+L P P P P+P RP ++
Sbjct: 18 PLGTASSTTIASYLLGLWSRAHRHSLPAPAPAPAPAPAPETHRPGIR 64
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 74 VCVFDVTHCCVLNLTTVRNDM 12
VC FD+ CC L T+ NDM
Sbjct: 836 VCHFDLRTCCALPPATLENDM 856
>04_03_0630 -
18182681-18182931,18183397-18183463,18184899-18184964,
18185057-18185178,18185263-18185425,18186082-18186329,
18186418-18186751,18186857-18187000,18187079-18187144
Length = 486
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 748 GRDYGNASAK*GGEV--LRVTSARGRAPRSPSTTSVL 644
GR G + GG+V RV + GRA R+PS TS +
Sbjct: 448 GRGAGRGGSSRGGDVGYQRVDHSAGRAARAPSGTSAV 484
>03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068
Length = 145
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +1
Query: 82 PETPGPQPPSPCNVRP-CVKTVSLC*RVVHARLLKCPHP 195
PE P PP C + P C C ++ +LL+ HP
Sbjct: 8 PENESPPPPPHCWIYPECTLVTRSCCLLLRLKLLRHGHP 46
>08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695
Length = 664
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 401 PDGDLGTQLRTDFDSGKELLCTVL 472
PDGDL ++R +SGKEL L
Sbjct: 206 PDGDLKDKMRDAMESGKELTSNAL 229
>08_02_0733 +
20546072-20546325,20546924-20547017,20547441-20547624,
20547722-20547831,20548328-20548423,20548525-20548679,
20548743-20548986,20549159-20549314,20549600-20549829,
20552213-20552316,20552420-20552505,20552776-20553066,
20553383-20553475,20553640-20553735,20553838-20553939,
20554196-20554266,20554784-20555035,20555786-20556529,
20557038-20557119,20557192-20557347,20557446-20557655,
20558282-20558665
Length = 1397
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 84 GDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 242
G SG+ + + SA+ ++ F + + K+VEM ++ K + KVH G D
Sbjct: 543 GTSGSKCS--LWLSAIVRHMFTLYDFKLAKLVEMESALEDKSKNVKVHAEGYD 593
>05_01_0297 - 2314687-2316021
Length = 444
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 326 LTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTV 469
+ D + +G L + AD D+R + DGD G +LR F S +LL V
Sbjct: 91 VVDCTGEGVLFVEAD-ADVRLEELEEDGDGGGELRPPFPSMDQLLLDV 137
>04_01_0031 + 381389-381841
Length = 150
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Frame = +1
Query: 40 KTQQWVTSKTHTLR-----PETPGPQPPSPCNVRP 129
+ ++W T +T TLR P+T P PP P P
Sbjct: 69 RERRWCTPRTSTLRREWALPDTASPPPPLPLEPAP 103
>02_05_0402 +
28687597-28687671,28688123-28688235,28688927-28689432,
28689544-28689717,28689953-28690082,28692241-28692772,
28693578-28693823,28694648-28695061
Length = 729
Score = 27.9 bits (59), Expect = 9.2
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +2
Query: 266 DICPSTHNMD---VPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD 436
D CP T D V++ + TD +M G + GDLG+ RTD
Sbjct: 233 DQCPGTSATDSTGATCVQQAEKVSTDSDQVAKAAMMTAEGAMNFMRSTISGDLGSFPRTD 292
Query: 437 FDSGKE 454
SGKE
Sbjct: 293 AASGKE 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,043,107
Number of Sequences: 37544
Number of extensions: 491143
Number of successful extensions: 1767
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1756
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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