Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00295
         (754 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                99   4e-21
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)            26   0.78 
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               30   2.3  
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.3  
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         28   7.1  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  28   7.1  
SB_54348| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 43/60 (71%), Positives = 51/60 (85%)
 Frame = +3

Query: 45  TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 224
           T   ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644



 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 23/52 (44%), Positives = 37/52 (71%)
 Frame = +2

Query: 323 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKS 478
           ++T+I +DGYL LM DNGD R D+K+ D D+  ++R  F++ +  + TVLK+
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKA 694


>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
          Length = 458

 Score = 26.2 bits (55), Expect(2) = 0.78
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +1

Query: 109 SPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSMVKV*RY 270
           +PC ++ C + +S+    V   ++K P   P    TL   ++G  +  +K+ +Y
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIGHQARKLKIVKY 451



 Score = 23.8 bits (49), Expect(2) = 0.78
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 91  PGPQPPSPCNVRP 129
           PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 58  TSKTHTLRPETPGPQPPSPCNVRPCVKTVSLC*RVVH-ARLLKCPH 192
           T+K HT +P T  P    P N+ P + + +L   ++H     + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 10  HISFLTVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRPC 132
           H   L   K KT +  T+K +T +P T  P+   P   +PC
Sbjct: 92  HTIKLYTTKPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132


>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +1

Query: 46  QQWVTSKTHTLRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKP 201
           +Q V S      P  P P PP+PC + PC +T     +VVH+  L    P P
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT-----QVVHSVQLHASPPGP 171


>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 135 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGIDIFNGKSMKISVPPH 284
           + G +M +G+PCKI   +   K G HG   +H+ G D  NG    +S  PH
Sbjct: 17  RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG-DNTNG---CVSAGPH 62


>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1940

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 501  R*RTPHRQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPL 370
            R R P    + T  + S PL+   R+  PRSP  ++    RSP+
Sbjct: 1675 RSRDPDSSPYRTPSDRSSPLTVGGRSSRPRSPPRLMEPRPRSPV 1718


>SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -3

Query: 302 GVRPCCVWRDRYLHTFTIEDINPNQVNFSVAVLSGFGCGHFNNLAWTTLQHNETVFTQ 129
           G+R C    D  L  F   + +    + S A ++ +G GH N +    L H   + TQ
Sbjct: 243 GLRSCITHGDDLLSVFDNMESSSKVFDMSNAPVTRYGLGHVNQILEEELSHLRFLKTQ 300


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 147  RNRFYAGPNIAW--GRWLRPRSLRSQSV 70
            R  F+  PN+A   G+WL P+SLR+  V
Sbjct: 947  REGFFNNPNLAGCKGQWLGPKSLRASRV 974


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 25  TVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRP 129
           +VV     + VT K  T +P TP P  P P   RP
Sbjct: 758 SVVAMPAARPVTPKPVTPKPVTPKPVTPKPVTTRP 792


>SB_54348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -2

Query: 555 NPINAELVYLSRAVFA*RR*RTPHRQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRS 376
           N  N  +V  S +    RR R P  +   TVH +  P+++  R  +P++ +  ++S  ++
Sbjct: 82  NNSNQRIVSYSHSPGILRRCRLPFSRGNGTVHMSKQPVNRDPRTNIPKNHNSQVQSEMKN 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,335,595
Number of Sequences: 59808
Number of extensions: 564682
Number of successful extensions: 1627
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1618
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)