Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00295
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   121   6e-28
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...   109   2e-24
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    29   2.7  
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    29   2.7  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    29   2.7  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    29   2.7  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    29   4.7  
Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  121 bits (291), Expect = 6e-28
 Identities = 54/72 (75%), Positives = 60/72 (83%)
 Frame = +3

Query: 63  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 242
           +D HF TGDSGA+ATFP QCSALRKN  VM+KGRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66

Query: 243 IFNGKSMKISVP 278
           IF  K ++   P
Sbjct: 67  IFTSKKLEDICP 78



 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
 Frame = +2

Query: 257 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGTQLRT 433
           K EDICPSTHNMDVP VKR +Y L  I DDGY +LM  ++ + ++DLK+PD +LG Q+R 
Sbjct: 72  KLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELGQQIRD 130

Query: 434 DF--DSGKELLCTV 469
            +  D G  L+  V
Sbjct: 131 AYEKDEGSVLVQVV 144


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score =  109 bits (262), Expect = 2e-24
 Identities = 48/72 (66%), Positives = 59/72 (81%)
 Frame = +3

Query: 63  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 242
           ++  F++ +SGA+ATFP QCSALRKN  VM++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100

Query: 243 IFNGKSMKISVP 278
           IF  K ++   P
Sbjct: 101 IFTTKKLEDICP 112



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 3/74 (4%)
 Frame = +2

Query: 257 KYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGTQLR- 430
           K EDICPSTHNMDVP VKR +Y L  I +DG+ +LM  ++ +L++DLK+P+GDLG  +R 
Sbjct: 106 KLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLGNTIRE 164

Query: 431 -TDFDSGKELLCTV 469
             + D G  L+  V
Sbjct: 165 ALEKDEGSVLVQVV 178


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +1

Query: 28  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 144
           V+K  T + ++S T      T    TPGP P +PC+  P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +1

Query: 28  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 144
           V+K  T + ++S T      T    TPGP P +PC+  P V T+
Sbjct: 13  VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 56


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +1

Query: 28  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 144
           V+K  T + ++S T      T    TPGP P +PC+  P V T+
Sbjct: 167 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 210


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +1

Query: 28  VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 144
           V+K  T + ++S T      T    TPGP P +PC+  P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 58  TSKTHTLRPETPGPQPPSPCNVRP 129
           T K  T R E+P P PP P   RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381


>Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A8.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 347 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 463
           GYL      GD ++++K+ +G    Q+ +D D  K   C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 145 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 53
           +P  +R+++C G + E  E  ++KC  +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,341,307
Number of Sequences: 27780
Number of extensions: 406944
Number of successful extensions: 1179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)