Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00294
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.0  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   2.0  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   2.7  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   4.7  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   4.7  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   6.2  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   8.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   8.1  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   8.1  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 330 RHQYCQSWILQVARQRQTPQTTCHSKS 410
           RH   ++W+    R + TPQ+   S++
Sbjct: 237 RHLERKAWVASFGRPKMTPQSLLPSQT 263


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 259 LSQNWTEILVLSKVEISHTKF 197
           ++ +WTEI   + V  S TKF
Sbjct: 57  ITYSWTEINAFANVSPSKTKF 77


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 143 GEHHHRINMDKYHPGCFGKLGMRNFHFRKNKNFCPV 250
           GEH H +N+      C  + G    +  +N N C V
Sbjct: 39  GEHGHCVNLPGVGHRCQCQPGFTGKYCHENINDCKV 74


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 259 LSQNWTEILVLSKVEISHTKF 197
           L + WT + V   VEIS   F
Sbjct: 194 LGETWTSLSVYHLVEISEIHF 214


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 259 LSQNWTEILVLSKVEISHTKF 197
           L + WT + V   VEIS   F
Sbjct: 190 LGETWTSLSVYHLVEISEIHF 210


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 270 DISL*TDEAEVCICSRWQGPRHQYCQ 347
           D+S    E + CI  + Q  R QYC+
Sbjct: 117 DLSYACREEKNCIIDKRQRNRCQYCR 142


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 401 MTGCLGSLPLPSNL*YPALTILMTGTL 321
           MTG    +P  S + Y    ILM GT+
Sbjct: 271 MTGTKTVMPSQSAIKYRKQVILMLGTV 297


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 259 LSQNWTEILVLSKVEISHTKF 197
           ++ +WTEI   + V    TKF
Sbjct: 57  ITYSWTEINAFANVSPPKTKF 77


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 132 PRPPGCLRCFPIRP 91
           P P G L  +P RP
Sbjct: 65  PSPRGALGAYPFRP 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,965
Number of Sequences: 336
Number of extensions: 2301
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)