Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00294
(499 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a pr... 89 8e-18
BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a ... 89 8e-18
AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a ... 89 8e-18
AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A ... 89 8e-18
BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for IM... 88 1e-17
BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a ... 86 6e-17
AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a ... 43 5e-04
AK126225-1|BAC86496.1| 139|Homo sapiens protein ( Homo sapiens ... 29 9.0
>U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 89.0 bits (211), Expect = 8e-18
Identities = 37/73 (50%), Positives = 48/73 (65%)
Frame = +2
Query: 35 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGCFGKLGMRN 214
M + +KTRKLRGHVS NAGG HHHRIN DKYHPG FGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 215 FHFRKNKNFCPVL 253
+H ++N++FCP +
Sbjct: 61 YHLKRNQSFCPTV 73
Score = 68.1 bits (159), Expect = 2e-11
Identities = 36/88 (40%), Positives = 46/88 (52%)
Frame = +1
Query: 214 FPL*KEQEFLSSFDLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 393
+ L + Q F + +LDKLWTLVSEQTR+ A G P+I++V++ PKQ
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 394 PVIVXXXXXXXXXXXXXXDVGGACVLSA 477
PVIV VGGACVL A
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 89.0 bits (211), Expect = 8e-18
Identities = 37/73 (50%), Positives = 48/73 (65%)
Frame = +2
Query: 35 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGCFGKLGMRN 214
M + +KTRKLRGHVS NAGG HHHRIN DKYHPG FGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 215 FHFRKNKNFCPVL 253
+H ++N++FCP +
Sbjct: 61 YHLKRNQSFCPTV 73
Score = 68.1 bits (159), Expect = 2e-11
Identities = 36/88 (40%), Positives = 46/88 (52%)
Frame = +1
Query: 214 FPL*KEQEFLSSFDLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 393
+ L + Q F + +LDKLWTLVSEQTR+ A G P+I++V++ PKQ
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 394 PVIVXXXXXXXXXXXXXXDVGGACVLSA 477
PVIV VGGACVL A
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a
protein.
Length = 106
Score = 89.0 bits (211), Expect = 8e-18
Identities = 37/73 (50%), Positives = 48/73 (65%)
Frame = +2
Query: 35 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGCFGKLGMRN 214
M + +KTRKLRGHVS NAGG HHHRIN DKYHPG FGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 215 FHFRKNKNFCPVL 253
+H ++N++FCP +
Sbjct: 61 YHLKRNQSFCPTV 73
Score = 48.0 bits (109), Expect = 2e-05
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = +1
Query: 214 FPL*KEQEFLSSFDLDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 351
+ L + Q F + +LDKLWTLVSEQTR+ A G P+I++V++
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106
>AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A
protein.
Length = 148
Score = 89.0 bits (211), Expect = 8e-18
Identities = 37/73 (50%), Positives = 48/73 (65%)
Frame = +2
Query: 35 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGCFGKLGMRN 214
M + +KTRKLRGHVS NAGG HHHRIN DKYHPG FGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 215 FHFRKNKNFCPVL 253
+H ++N++FCP +
Sbjct: 61 YHLKRNQSFCPTV 73
Score = 68.1 bits (159), Expect = 2e-11
Identities = 36/88 (40%), Positives = 46/88 (52%)
Frame = +1
Query: 214 FPL*KEQEFLSSFDLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 393
+ L + Q F + +LDKLWTLVSEQTR+ A G P+I++V++ PKQ
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 394 PVIVXXXXXXXXXXXXXXDVGGACVLSA 477
PVIV VGGACVL A
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for
IMAGE:3543815) protein.
Length = 147
Score = 88.2 bits (209), Expect = 1e-17
Identities = 36/68 (52%), Positives = 46/68 (67%)
Frame = +2
Query: 50 KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGCFGKLGMRNFHFRK 229
+KTRKLRGHVS NAGG HHHRIN DKYHPG FGK+GM+++H ++
Sbjct: 5 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 64
Query: 230 NKNFCPVL 253
N++FCP +
Sbjct: 65 NQSFCPTV 72
Score = 68.1 bits (159), Expect = 2e-11
Identities = 36/88 (40%), Positives = 46/88 (52%)
Frame = +1
Query: 214 FPL*KEQEFLSSFDLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 393
+ L + Q F + +LDKLWTLVSEQTR+ A G P+I++V++ PKQ
Sbjct: 60 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 119
Query: 394 PVIVXXXXXXXXXXXXXXDVGGACVLSA 477
PVIV VGGACVL A
Sbjct: 120 PVIVKAKFFSRRAEEKIKSVGGACVLVA 147
>BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 86.2 bits (204), Expect = 6e-17
Identities = 36/73 (49%), Positives = 48/73 (65%)
Frame = +2
Query: 35 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGCFGKLGMRN 214
M + +KTRKLRGHVS NAGG HHHRIN DKYHPG FGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 215 FHFRKNKNFCPVL 253
++ ++N++FCP +
Sbjct: 61 YNLKRNQSFCPTV 73
Score = 64.9 bits (151), Expect = 1e-10
Identities = 35/88 (39%), Positives = 45/88 (51%)
Frame = +1
Query: 214 FPL*KEQEFLSSFDLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 393
+ L + Q F + +LDKLWTLVSEQTR+ A G P+I++V++ KQ
Sbjct: 61 YNLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLAKQ 120
Query: 394 PVIVXXXXXXXXXXXXXXDVGGACVLSA 477
PVIV VGGACVL A
Sbjct: 121 PVIVKAKLFSRRAEEKIKSVGGACVLVA 148
>AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a
protein.
Length = 34
Score = 43.2 bits (97), Expect = 5e-04
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +1
Query: 253 DLDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 351
+LDKLWTLVSEQTR+ A G P+I++V++
Sbjct: 2 NLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 34
>AK126225-1|BAC86496.1| 139|Homo sapiens protein ( Homo sapiens
cDNA FLJ44237 fis, clone THYMU3007845. ).
Length = 139
Score = 29.1 bits (62), Expect = 9.0
Identities = 12/43 (27%), Positives = 15/43 (34%)
Frame = +3
Query: 348 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGCGWCLCTIC 476
+W L Q PQ + L R + C WC C C
Sbjct: 71 AWFLSPVHHSQIPQLAACPLQSLRLSKPRSPGRCCAWCGCLNC 113
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,364,723
Number of Sequences: 237096
Number of extensions: 1465642
Number of successful extensions: 3286
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3279
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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