Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00294
         (499 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66358-1|AAC47472.1|  149|Drosophila melanogaster RpL27a protein.      87   9e-18
U66357-1|AAC47475.1|  149|Drosophila melanogaster ribosomal prot...    87   9e-18
AY071144-1|AAL48766.1|  149|Drosophila melanogaster RE17991p pro...    87   9e-18
AE014134-746|AAF51006.3|  149|Drosophila melanogaster CG15442-PA...    87   9e-18
X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal prot...    85   4e-17
D10228-1|BAA01080.1|  761|Drosophila melanogaster Ets domain pro...    29   2.6  
BT022680-1|AAY55096.1|  420|Drosophila melanogaster IP12282p pro...    29   4.6  
AE014297-3766|AAF56443.2|  420|Drosophila melanogaster CG31104-P...    29   4.6  
EF058032-1|ABL84967.1|  796|Drosophila melanogaster Nup153 protein.    28   8.1  
EF058031-1|ABL84966.1|  796|Drosophila melanogaster Nup153 protein.    28   8.1  

>U66358-1|AAC47472.1|  149|Drosophila melanogaster RpL27a protein.
          Length = 149

 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 39/67 (58%), Positives = 42/67 (62%)
 Frame = +2

Query: 47  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGCFGKLGMRNFHFR 226
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPG FGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 227 KNKNFCP 247
           +   F P
Sbjct: 66  RQHKFRP 72



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 27/88 (30%), Positives = 38/88 (43%)
 Frame = +1

Query: 214 FPL*KEQEFLSSFDLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 393
           F L ++ +F    +LDKLW+LV  +   +       K PVI++VK            P +
Sbjct: 62  FHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPAR 121

Query: 394 PVIVXXXXXXXXXXXXXXDVGGACVLSA 477
           PVIV                GG C+LSA
Sbjct: 122 PVIVKAKYFSKKAEDKIKKAGGVCLLSA 149


>U66357-1|AAC47475.1|  149|Drosophila melanogaster ribosomal protein
           RpL27a protein.
          Length = 149

 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 39/67 (58%), Positives = 42/67 (62%)
 Frame = +2

Query: 47  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGCFGKLGMRNFHFR 226
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPG FGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 227 KNKNFCP 247
           +   F P
Sbjct: 66  RQHKFRP 72



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 27/88 (30%), Positives = 38/88 (43%)
 Frame = +1

Query: 214 FPL*KEQEFLSSFDLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 393
           F L ++ +F    +LDKLW+LV  +   +       K PVI++VK            P +
Sbjct: 62  FHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPAR 121

Query: 394 PVIVXXXXXXXXXXXXXXDVGGACVLSA 477
           PVIV                GG C+LSA
Sbjct: 122 PVIVKAKYFSKKAEDKIKKAGGVCLLSA 149


>AY071144-1|AAL48766.1|  149|Drosophila melanogaster RE17991p
           protein.
          Length = 149

 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 39/67 (58%), Positives = 42/67 (62%)
 Frame = +2

Query: 47  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGCFGKLGMRNFHFR 226
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPG FGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 227 KNKNFCP 247
           +   F P
Sbjct: 66  RQHKFRP 72



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 27/88 (30%), Positives = 38/88 (43%)
 Frame = +1

Query: 214 FPL*KEQEFLSSFDLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 393
           F L ++ +F    +LDKLW+LV  +   +       K PVI++VK            P +
Sbjct: 62  FHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPAR 121

Query: 394 PVIVXXXXXXXXXXXXXXDVGGACVLSA 477
           PVIV                GG C+LSA
Sbjct: 122 PVIVKAKYFSKKAEDKIKKAGGVCLLSA 149


>AE014134-746|AAF51006.3|  149|Drosophila melanogaster CG15442-PA
           protein.
          Length = 149

 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 39/67 (58%), Positives = 42/67 (62%)
 Frame = +2

Query: 47  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGCFGKLGMRNFHFR 226
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPG FGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 227 KNKNFCP 247
           +   F P
Sbjct: 66  RQHKFRP 72



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 27/88 (30%), Positives = 38/88 (43%)
 Frame = +1

Query: 214 FPL*KEQEFLSSFDLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 393
           F L ++ +F    +LDKLW+LV  +   +       K PVI++VK            P +
Sbjct: 62  FHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPAR 121

Query: 394 PVIVXXXXXXXXXXXXXXDVGGACVLSA 477
           PVIV                GG C+LSA
Sbjct: 122 PVIVKAKYFSKKAEDKIKKAGGVCLLSA 149


>X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal protein
           L27a protein.
          Length = 149

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 38/67 (56%), Positives = 41/67 (61%)
 Frame = +2

Query: 47  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGCFGKLGMRNFHFR 226
           +KKTRKLRGHVS                 N GG HHHRIN DKYHPG FGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNLGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 227 KNKNFCP 247
           +   F P
Sbjct: 66  RQHKFRP 72



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 27/88 (30%), Positives = 39/88 (44%)
 Frame = +1

Query: 214 FPL*KEQEFLSSFDLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 393
           F L ++ +F    +LDKLW+LV  +   +       K PVI++VK            P +
Sbjct: 62  FHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPAR 121

Query: 394 PVIVXXXXXXXXXXXXXXDVGGACVLSA 477
           PVIV              + GG C+LSA
Sbjct: 122 PVIVKAKYFSKKAEDKIKEAGGVCLLSA 149


>D10228-1|BAA01080.1|  761|Drosophila melanogaster Ets domain
           protein protein.
          Length = 761

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 330 RHQYCQSWILQVARQRQTPQTTCHSKSKVLLKIS 431
           RH  C+   + +A  R+TP  TC S+ + +L+ S
Sbjct: 710 RHSQCRWKAIAMAASRRTPSDTCSSRRRSVLRQS 743


>BT022680-1|AAY55096.1|  420|Drosophila melanogaster IP12282p
           protein.
          Length = 420

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 146 EHHHRINMDKYHPGCFGKLGMRNFHFRKNK 235
           E+H     D+Y+  C G   +RN  FR NK
Sbjct: 248 EYHKYRRNDRYYVLCHGDFHLRNMMFRHNK 277


>AE014297-3766|AAF56443.2|  420|Drosophila melanogaster CG31104-PA
           protein.
          Length = 420

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 146 EHHHRINMDKYHPGCFGKLGMRNFHFRKNK 235
           E+H     D+Y+  C G   +RN  FR NK
Sbjct: 248 EYHKYRRNDRYYVLCHGDFHLRNMMFRHNK 277


>EF058032-1|ABL84967.1|  796|Drosophila melanogaster Nup153 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 140 GGEHHHRINMDKYHPGCFGKLGMRNFHFRKNKN 238
           GG+     +M++YH    G  G+R  H+  N N
Sbjct: 410 GGDSQSESDMNEYHDNGEGHDGLRPSHYNSNSN 442


>EF058031-1|ABL84966.1|  796|Drosophila melanogaster Nup153 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 140 GGEHHHRINMDKYHPGCFGKLGMRNFHFRKNKN 238
           GG+     +M++YH    G  G+R  H+  N N
Sbjct: 410 GGDSQSESDMNEYHDNGEGHDGLRPSHYNSNSN 442


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,500,794
Number of Sequences: 53049
Number of extensions: 443162
Number of successful extensions: 1562
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1470
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)