Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00294
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   1.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.3  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   3.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   3.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   3.1  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   3.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   3.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   3.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   3.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   3.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.1  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   5.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   5.4  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 285 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQTPQT 392
           +DEAE    S+  G    + QS I +VAR+ +T  T
Sbjct: 272 SDEAEPSSTSKKSGIVRSHQQSCINRVARETKTAGT 307


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 330 RHQYCQSWILQVARQRQTPQTTCHSKS 410
           RH   ++W+    R + TPQ+   S++
Sbjct: 241 RHLERKAWVASFGRPKMTPQSLLPSQT 267


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 311 ADAYFSLVCSETNVQSLSKSKLDRNS 234
           +D+ +S  CS +  Q  S S + RNS
Sbjct: 13  SDSGYSNTCSNSQSQRSSGSSISRNS 38


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 311 ADAYFSLVCSETNVQSLSKSKLDRNS 234
           +D+ +S  CS +  Q  S S + RNS
Sbjct: 13  SDSGYSNTCSNSQSQRSSGSSISRNS 38


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 285 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 380
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 285 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 380
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 285 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 380
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 285 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 380
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 285 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 380
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 285 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 380
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 285 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 380
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 285 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 380
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 277 VSEQTRLKYASAPDGKVPVI 336
           V EQT      A D KVP+I
Sbjct: 230 VKEQTLQSIEMAKDAKVPII 249


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 270 DISL*TDEAEVCICSRWQGPRHQYCQ 347
           D+S    E + CI  + Q  R QYC+
Sbjct: 141 DLSYACREEKSCIIDKRQRNRCQYCR 166


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 270 DISL*TDEAEVCICSRWQGPRHQYCQ 347
           D+S    E + CI  + Q  R QYC+
Sbjct: 141 DLSYACREEKSCIIDKRQRNRCQYCR 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,260
Number of Sequences: 438
Number of extensions: 2673
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)