Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00293
         (772 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    23   2.0  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   2.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   6.2  

>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 468 EKGSFFWNTPFKLEGNKYKLLFTY 397
           +KG  FW +PF +    +  + TY
Sbjct: 390 DKGDIFWFSPFLVANLAFVTIVTY 413


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 458 EPFSKPLIYALYHDLKKLTNS*KMIRFITSLKGDSGKKL 574
           E FSK +   ++ D +      +++R+ TS  GD    L
Sbjct: 428 EQFSKNIKLGIHEDSQNRAKLSELLRYHTSASGDEACSL 466


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 37  LLLKLIHKYNPTV 75
           ++L  +HKY PTV
Sbjct: 144 IMLNSLHKYKPTV 156


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,495
Number of Sequences: 336
Number of extensions: 3619
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)