Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00293
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    66   5e-12
SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr 1||...    26   5.2  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   6.9  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    25   9.1  

>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 66.1 bits (154), Expect = 5e-12
 Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
 Frame = +2

Query: 257 VFEQGPRTIRPKGVTGLNTLNMIQDLGLSEHISPIKPDHPAARNRMIYVNNNLYLLPSSL 436
           +FEQGPRT+RP GV GL  L++I  LG+ + +  I  + P+A+NR IY  + L  +PSS+
Sbjct: 57  LFEQGPRTLRPAGVAGLANLDLISKLGIEDKLLRISSNSPSAKNRYIYYPDRLNEIPSSI 116

Query: 437 KGVFQK-NEPFSKPLIYAL 490
            G  +   +P  +P+  A+
Sbjct: 117 LGSIKSIMQPALRPMPLAM 135



 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
 Frame = +1

Query: 490 LPRFKEAHKQLKDDSIYNFVERRFGKEIADYAISPMICGICAGDAKEISV-KFLMKTLFE 666
           L  F+++ +   D+S+ +F+ RRFGK + D  +S MI GI AGD  ++S+   +   L +
Sbjct: 137 LEPFRKSKRDSTDESVGSFMRRRFGKNVTDRVMSAMINGIYAGDLNDLSMHSSMFGFLAK 196

Query: 667 WEQTHGGVVKGLMKSLFS 720
            E+ +G +  GL+++L +
Sbjct: 197 IEKKYGNITLGLIRALLA 214


>SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 118

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 372 WSGFIGDICSLRPKSCIIFSVLRPVTPLGRIVL 274
           +SG I  +C L PK   +  +L P+TP+G +V+
Sbjct: 78  FSGTIYGLCLL-PKGHSLRRILGPLTPIGGLVM 109


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 398 YVNNNLYLLPSSLKGVFQKNEPFSK 472
           Y+NNN YL PS +      N P+ K
Sbjct: 469 YINNNSYLPPSYMDFYTWYNSPYPK 493


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -3

Query: 707 FIKPFTTPPWVCS--HSNRVFIRNLTEISLASPAQMPQIIG 591
           FI  FTTP WV S   S+       T  + A+P  M   +G
Sbjct: 250 FILSFTTPVWVVSGFESSAAVAEESTNAAKAAPFAMISSLG 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,305
Number of Sequences: 5004
Number of extensions: 63543
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)