Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00293
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0330 + 24456200-24456261,24456385-24456520,24457100-244571...    42   7e-04
03_03_0257 + 15903723-15905201                                         31   1.3  
02_01_0001 - 3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,6...    28   7.2  

>04_04_0330 +
           24456200-24456261,24456385-24456520,24457100-24457165,
           24457260-24457310,24457399-24457455,24457742-24457827,
           24458207-24458216,24458385-24458450,24458744-24458784,
           24460050-24460182,24460857-24461045,24461145-24461219,
           24462228-24462358,24463155-24463229,24463385-24463562
          Length = 451

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +1

Query: 568 EIADYAISPMICGICAGDAKEISVKFLMKTLFEWEQTHGGVVKGLMKSLFSSKTEN 735
           ++ DY I P + G   GD + +S++     L+  E  +G V+ G + S  S+K ++
Sbjct: 156 QVVDYLIDPFVAGTSGGDPESLSIRHAFPALWNLENKYGSVIAGAILSKLSTKGDS 211


>03_03_0257 + 15903723-15905201
          Length = 492

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = +2

Query: 245 DKGYVFEQGPRTIRPKGVTGLNTLNMIQDLGL-SEHISPIKPDHPAARNRMIY-VNNNLY 418
           DK  +FE  P  +R  G TG+  +     +GL +E ++P+     AA   +++ V++ + 
Sbjct: 56  DKVKLFEADPSALRALGHTGIQVM-----VGLPNELLAPVSSSVAAAEQWVLHNVSSYIS 110

Query: 419 LLPSSLKGVFQKNEPFSK 472
            L   ++ V   NEPF K
Sbjct: 111 KLGVDIRAVAVGNEPFLK 128


>02_01_0001 -
           3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,
           6419-6493,6619-6705,6873-6953,7021-7163,7262-7430,
           7538-7667,7753-8255
          Length = 577

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 490 LPRFKEAHKQLKDDSIYNFVER---RFGKEIADY 582
           LP FKEA K  K   ++ FVER     G+ +A+Y
Sbjct: 329 LPIFKEASKSFKGKLLFVFVERDNEEVGEPVANY 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,626,471
Number of Sequences: 37544
Number of extensions: 362628
Number of successful extensions: 798
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)