Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00293
(772 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59043| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0) 31 0.78
SB_33427| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12) 30 1.8
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) 30 2.4
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_41628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_23104| Best HMM Match : DUF947 (HMM E-Value=0.098) 29 5.5
SB_45987| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_33833| Best HMM Match : DUF947 (HMM E-Value=0.2) 29 5.5
SB_9283| Best HMM Match : DUF947 (HMM E-Value=0.3) 29 5.5
SB_33677| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_59043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/45 (37%), Positives = 30/45 (66%)
Frame = +1
Query: 571 IADYAISPMICGICAGDAKEISVKFLMKTLFEWEQTHGGVVKGLM 705
+A+Y P+ GI AGDA+ +S++ + ++E E+ +G VVKG +
Sbjct: 1 VAEYIGDPVCRGIFAGDARALSLRAVFPAVYEMEKNYGSVVKGAL 45
>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1433
Score = 31.5 bits (68), Expect = 0.78
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -1
Query: 418 IQIIVYVYHSVPSGRVVRFYR*YML 344
+Q++VY++ S+P+G + FYR Y L
Sbjct: 1101 LQVVVYIFESLPTGGMSGFYRLYSL 1125
>SB_33427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 627 FSVPSTDATNHW*NCIIS--NFFPESPFNEVINRIIFQLFVSFF 502
FSV H C+I +FFPE N+ I ++F LFVS F
Sbjct: 171 FSVLYKGNNTHHVRCVIDWGSFFPEDAHNKYIAFLVFFLFVSPF 214
>SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12)
Length = 567
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 354 DICSLRPKSCIIFSVLRPVTPLGRIVLGP 268
+I L PKSC LRP TP G V+ P
Sbjct: 450 EISVLYPKSCHHIKQLRPATPSGHYVIDP 478
>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
Length = 943
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 619 PQHRCHKSLVKLHNQQFLSRISFQRSYK 536
P RC + +++LHNQ FL I+ + K
Sbjct: 786 PSKRCPRDILRLHNQSFLHAITLKEVIK 813
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 428 SSLKGVFQKNEPFSKPLIYALYHDLKKLTNS 520
SSL + F KP+ ++Y+D+KKL N+
Sbjct: 505 SSLNNTVYEGYKFVKPIKVSMYYDVKKLVNA 535
>SB_41628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 690
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 505 EAHKQLKDDSIYNFVERRFGKEIADYAISPMICGICAGDAKEISVKFLM 651
EA+++L+ D + + R G + D+ + CGIC GD +E + LM
Sbjct: 281 EANEKLQQDLVKQ-AKIRSGIDTRDWFMVSKECGICFGDFRENKMTALM 328
>SB_23104| Best HMM Match : DUF947 (HMM E-Value=0.098)
Length = 807
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 619 PQHRCHKSLVKLHNQQFLSRISFQRSYK 536
P RC + +++LHNQ FL ++ + K
Sbjct: 651 PSKRCPRDILRLHNQSFLHAMTLKEVIK 678
>SB_45987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 619 PQHRCHKSLVKLHNQQFLSRISFQRSYK 536
P RC + +++LHNQ FL ++ + K
Sbjct: 754 PSKRCPRDILRLHNQSFLHAMTLKEVIK 781
>SB_33833| Best HMM Match : DUF947 (HMM E-Value=0.2)
Length = 1106
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 619 PQHRCHKSLVKLHNQQFLSRISFQRSYK 536
P RC + +++LHNQ FL ++ + K
Sbjct: 801 PSKRCPRDILRLHNQSFLHAMTLKEVIK 828
>SB_9283| Best HMM Match : DUF947 (HMM E-Value=0.3)
Length = 588
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 619 PQHRCHKSLVKLHNQQFLSRISFQRSYK 536
P RC + +++LHNQ FL ++ + K
Sbjct: 295 PSKRCPRDILRLHNQSFLHAMTLKEVIK 322
>SB_33677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +2
Query: 59 NIILQFLTRVK*EDNGRYTWRWAGWSLYRL 148
N+I Q R+ E N RY WRW G+ LY L
Sbjct: 273 NLIAQRYGRIL-ERNTRYCWRWTGF-LYGL 300
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,642,684
Number of Sequences: 59808
Number of extensions: 426156
Number of successful extensions: 927
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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