Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00293
(772 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U26446-1|AAA67690.1| 477|Homo sapiens protoporphyrinogen oxidas... 93 1e-18
D38537-1|BAA07538.1| 477|Homo sapiens protoporphyrinogen oxidas... 93 1e-18
BC002357-1|AAH02357.1| 477|Homo sapiens protoporphyrinogen oxid... 93 1e-18
AY032687-1|AAK50376.1| 205|Homo sapiens protoporphyrinogen oxid... 93 1e-18
AL590714-4|CAH72144.1| 477|Homo sapiens protoporphyrinogen oxid... 93 1e-18
X85108-1|CAA59429.1| 1331|Homo sapiens alpha3b subunit of lamini... 35 0.37
X85107-1|CAA59428.1| 1238|Homo sapiens alpha3a subunit of lamini... 35 0.37
X84900-1|CAA59325.1| 1806|Homo sapiens alpha 3B chain of laminin... 35 0.37
L34155-1|AAA59483.1| 1713|Homo sapiens epiligrin alpha 3 subunit... 35 0.37
AY327115-1|AAQ72570.1| 3333|Homo sapiens laminin alpha 3 splice ... 35 0.37
AB208853-1|BAD92090.1| 1408|Homo sapiens Laminin alpha 3b chain ... 35 0.37
AB107369-1|BAD13428.1| 3333|Homo sapiens laminin alpha 3b chain ... 35 0.37
AY327116-1|AAQ72571.1| 3277|Homo sapiens laminin alpha 3 splice ... 33 1.1
AY327114-1|AAQ72569.1| 1668|Homo sapiens laminin alpha 3 splice ... 33 1.1
>U26446-1|AAA67690.1| 477|Homo sapiens protoporphyrinogen oxidase
protein.
Length = 477
Score = 93.1 bits (221), Expect = 1e-18
Identities = 40/86 (46%), Positives = 57/86 (66%)
Frame = +2
Query: 251 GYVFEQGPRTIRPKGVTGLNTLNMIQDLGLSEHISPIKPDHPAARNRMIYVNNNLYLLPS 430
G +FE GPR IRP G G TL ++ +LGL + P++ DHPAA+NR +YV L+ LP+
Sbjct: 51 GAIFELGPRGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPT 110
Query: 431 SLKGVFQKNEPFSKPLIYALYHDLKK 508
L+G+ + + PFSKPL +A +L K
Sbjct: 111 GLRGLLRPSPPFSKPLFWAGLRELTK 136
Score = 57.2 bits (132), Expect = 6e-08
Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Frame = +1
Query: 487 TLPRFKEAHKQLKDDSIYNFVERRFGKEIADYAISPMICGICAGDAKEISVKFLMKTLFE 666
T PR KE D+++++F +RR G E+A A+ + G+ AG+++E+S++ +LF+
Sbjct: 135 TKPRGKEP-----DETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQ 189
Query: 667 WEQTHGGVVKGLMKSL-FSSKTENELVLSDLARR 765
EQTH ++ GL+ + + ++ L+ LA R
Sbjct: 190 AEQTHRSILLGLLLGAGRTPQPDSALIRQALAER 223
>D38537-1|BAA07538.1| 477|Homo sapiens protoporphyrinogen oxidase
protein.
Length = 477
Score = 93.1 bits (221), Expect = 1e-18
Identities = 40/86 (46%), Positives = 57/86 (66%)
Frame = +2
Query: 251 GYVFEQGPRTIRPKGVTGLNTLNMIQDLGLSEHISPIKPDHPAARNRMIYVNNNLYLLPS 430
G +FE GPR IRP G G TL ++ +LGL + P++ DHPAA+NR +YV L+ LP+
Sbjct: 51 GAIFELGPRGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPT 110
Query: 431 SLKGVFQKNEPFSKPLIYALYHDLKK 508
L+G+ + + PFSKPL +A +L K
Sbjct: 111 GLRGLLRPSPPFSKPLFWAGLRELTK 136
Score = 57.2 bits (132), Expect = 6e-08
Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Frame = +1
Query: 487 TLPRFKEAHKQLKDDSIYNFVERRFGKEIADYAISPMICGICAGDAKEISVKFLMKTLFE 666
T PR KE D+++++F +RR G E+A A+ + G+ AG+++E+S++ +LF+
Sbjct: 135 TKPRGKEP-----DETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQ 189
Query: 667 WEQTHGGVVKGLMKSL-FSSKTENELVLSDLARR 765
EQTH ++ GL+ + + ++ L+ LA R
Sbjct: 190 AEQTHRSILLGLLLGAGRTPQPDSALIRQALAER 223
>BC002357-1|AAH02357.1| 477|Homo sapiens protoporphyrinogen oxidase
protein.
Length = 477
Score = 93.1 bits (221), Expect = 1e-18
Identities = 40/86 (46%), Positives = 57/86 (66%)
Frame = +2
Query: 251 GYVFEQGPRTIRPKGVTGLNTLNMIQDLGLSEHISPIKPDHPAARNRMIYVNNNLYLLPS 430
G +FE GPR IRP G G TL ++ +LGL + P++ DHPAA+NR +YV L+ LP+
Sbjct: 51 GAIFELGPRGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPT 110
Query: 431 SLKGVFQKNEPFSKPLIYALYHDLKK 508
L+G+ + + PFSKPL +A +L K
Sbjct: 111 GLRGLLRPSPPFSKPLFWAGLRELTK 136
Score = 57.2 bits (132), Expect = 6e-08
Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Frame = +1
Query: 487 TLPRFKEAHKQLKDDSIYNFVERRFGKEIADYAISPMICGICAGDAKEISVKFLMKTLFE 666
T PR KE D+++++F +RR G E+A A+ + G+ AG+++E+S++ +LF+
Sbjct: 135 TKPRGKEP-----DETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQ 189
Query: 667 WEQTHGGVVKGLMKSL-FSSKTENELVLSDLARR 765
EQTH ++ GL+ + + ++ L+ LA R
Sbjct: 190 AEQTHRSILLGLLLGAGRTPQPDSALIRQALAER 223
>AY032687-1|AAK50376.1| 205|Homo sapiens protoporphyrinogen oxidase
protein.
Length = 205
Score = 93.1 bits (221), Expect = 1e-18
Identities = 40/86 (46%), Positives = 57/86 (66%)
Frame = +2
Query: 251 GYVFEQGPRTIRPKGVTGLNTLNMIQDLGLSEHISPIKPDHPAARNRMIYVNNNLYLLPS 430
G +FE GPR IRP G G TL ++ +LGL + P++ DHPAA+NR +YV L+ LP+
Sbjct: 51 GAIFELGPRGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPT 110
Query: 431 SLKGVFQKNEPFSKPLIYALYHDLKK 508
L+G+ + + PFSKPL +A +L K
Sbjct: 111 GLRGLLRPSPPFSKPLFWAGLRELTK 136
Score = 56.8 bits (131), Expect = 8e-08
Identities = 26/73 (35%), Positives = 47/73 (64%)
Frame = +1
Query: 487 TLPRFKEAHKQLKDDSIYNFVERRFGKEIADYAISPMICGICAGDAKEISVKFLMKTLFE 666
T PR KE D+++++F +RR G E+A A+ + G+ AG+++E+S++ +LF+
Sbjct: 135 TKPRGKEP-----DETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQ 189
Query: 667 WEQTHGGVVKGLM 705
EQTH ++ GL+
Sbjct: 190 AEQTHRSILLGLL 202
>AL590714-4|CAH72144.1| 477|Homo sapiens protoporphyrinogen oxidase
protein.
Length = 477
Score = 93.1 bits (221), Expect = 1e-18
Identities = 40/86 (46%), Positives = 57/86 (66%)
Frame = +2
Query: 251 GYVFEQGPRTIRPKGVTGLNTLNMIQDLGLSEHISPIKPDHPAARNRMIYVNNNLYLLPS 430
G +FE GPR IRP G G TL ++ +LGL + P++ DHPAA+NR +YV L+ LP+
Sbjct: 51 GAIFELGPRGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPT 110
Query: 431 SLKGVFQKNEPFSKPLIYALYHDLKK 508
L+G+ + + PFSKPL +A +L K
Sbjct: 111 GLRGLLRPSPPFSKPLFWAGLRELTK 136
Score = 57.2 bits (132), Expect = 6e-08
Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Frame = +1
Query: 487 TLPRFKEAHKQLKDDSIYNFVERRFGKEIADYAISPMICGICAGDAKEISVKFLMKTLFE 666
T PR KE D+++++F +RR G E+A A+ + G+ AG+++E+S++ +LF+
Sbjct: 135 TKPRGKEP-----DETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQ 189
Query: 667 WEQTHGGVVKGLMKSL-FSSKTENELVLSDLARR 765
EQTH ++ GL+ + + ++ L+ LA R
Sbjct: 190 AEQTHRSILLGLLLGAGRTPQPDSALIRQALAER 223
>X85108-1|CAA59429.1| 1331|Homo sapiens alpha3b subunit of laminin 5
protein.
Length = 1331
Score = 34.7 bits (76), Expect = 0.37
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 619 DAKEISVKFLMKTLFEWEQTHGGVVKGLMKSLFSSKTENELVLSDLARRLR 771
+A + + L+ + W++TH G GL S+ S E E LSDL RL+
Sbjct: 466 EADKRESQLLLNRIRTWQKTHQGENNGLANSIRDSLNEYEAKLSDLRARLQ 516
>X85107-1|CAA59428.1| 1238|Homo sapiens alpha3a subunit of laminin 5
protein.
Length = 1238
Score = 34.7 bits (76), Expect = 0.37
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 619 DAKEISVKFLMKTLFEWEQTHGGVVKGLMKSLFSSKTENELVLSDLARRLR 771
+A + + L+ + W++TH G GL S+ S E E LSDL RL+
Sbjct: 373 EADKRESQLLLNRIRTWQKTHQGENNGLANSIRDSLNEYEAKLSDLRARLQ 423
>X84900-1|CAA59325.1| 1806|Homo sapiens alpha 3B chain of laminin-5
protein.
Length = 1806
Score = 34.7 bits (76), Expect = 0.37
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 619 DAKEISVKFLMKTLFEWEQTHGGVVKGLMKSLFSSKTENELVLSDLARRLR 771
+A + + L+ + W++TH G GL S+ S E E LSDL RL+
Sbjct: 466 EADKRESQLLLNRIRTWQKTHQGENNGLANSIRDSLNEYEAKLSDLRARLQ 516
>L34155-1|AAA59483.1| 1713|Homo sapiens epiligrin alpha 3 subunit
protein.
Length = 1713
Score = 34.7 bits (76), Expect = 0.37
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 619 DAKEISVKFLMKTLFEWEQTHGGVVKGLMKSLFSSKTENELVLSDLARRLR 771
+A + + L+ + W++TH G GL S+ S E E LSDL RL+
Sbjct: 373 EADKRESQLLLNRIRTWQKTHQGENNGLANSIRDSLNEYEAKLSDLRARLQ 423
>AY327115-1|AAQ72570.1| 3333|Homo sapiens laminin alpha 3 splice
variant b1 protein.
Length = 3333
Score = 34.7 bits (76), Expect = 0.37
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 619 DAKEISVKFLMKTLFEWEQTHGGVVKGLMKSLFSSKTENELVLSDLARRLR 771
+A + + L+ + W++TH G GL S+ S E E LSDL RL+
Sbjct: 1993 EADKRESQLLLNRIRTWQKTHQGENNGLANSIRDSLNEYEAKLSDLRARLQ 2043
>AB208853-1|BAD92090.1| 1408|Homo sapiens Laminin alpha 3b chain
variant protein.
Length = 1408
Score = 34.7 bits (76), Expect = 0.37
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 619 DAKEISVKFLMKTLFEWEQTHGGVVKGLMKSLFSSKTENELVLSDLARRLR 771
+A + + L+ + W++TH G GL S+ S E E LSDL RL+
Sbjct: 68 EADKRESQLLLNRIRTWQKTHQGENNGLANSIRDSLNEYEAKLSDLRARLQ 118
>AB107369-1|BAD13428.1| 3333|Homo sapiens laminin alpha 3b chain
protein.
Length = 3333
Score = 34.7 bits (76), Expect = 0.37
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 619 DAKEISVKFLMKTLFEWEQTHGGVVKGLMKSLFSSKTENELVLSDLARRLR 771
+A + + L+ + W++TH G GL S+ S E E LSDL RL+
Sbjct: 1993 EADKRESQLLLNRIRTWQKTHQGENNGLANSIRDSLNEYEAKLSDLRARLQ 2043
>AY327116-1|AAQ72571.1| 3277|Homo sapiens laminin alpha 3 splice
variant b2 protein.
Length = 3277
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 646 LMKTLFEWEQTHGGVVKGLMKSLFSSKTENELVLSDLARRLR 771
++ + W++TH G GL S+ S E E LSDL RL+
Sbjct: 1946 MLNRIRTWQKTHQGENNGLANSIRDSLNEYEAKLSDLRARLQ 1987
>AY327114-1|AAQ72569.1| 1668|Homo sapiens laminin alpha 3 splice
variant a protein.
Length = 1668
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 646 LMKTLFEWEQTHGGVVKGLMKSLFSSKTENELVLSDLARRLR 771
++ + W++TH G GL S+ S E E LSDL RL+
Sbjct: 337 MLNRIRTWQKTHQGENNGLANSIRDSLNEYEAKLSDLRARLQ 378
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,329,891
Number of Sequences: 237096
Number of extensions: 2090249
Number of successful extensions: 7169
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7169
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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