Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00293
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM748824-1|CAO72178.1|  512|Caenorhabditis elegans hexosaminidas...    28   8.5  
AL033513-1|CAA22078.2|  512|Caenorhabditis elegans Hypothetical ...    28   8.5  

>AM748824-1|CAO72178.1|  512|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 512

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
 Frame = -2

Query: 549 NEVINRIIFQLFVSFFKSW*SA*ISGFEKGSFFWNT--PF-------KLEGNKYKLLFTY 397
           N++ + +   +  SF + W  +   G +  S +WN   P+        L+  KYK  FT 
Sbjct: 259 NDLPSEMWKNMSYSFKEVWGGSAFKGADGASRYWNRLKPYILNNKEWYLQNEKYKPQFTT 318

Query: 396 IILFLAAGWSGF--IGDICSLRPKSCI 322
               +  GW  +     +C L P S +
Sbjct: 319 FDSIIITGWQRYDHFASLCELWPTSMV 345


>AL033513-1|CAA22078.2|  512|Caenorhabditis elegans Hypothetical
           protein Y70D2A.2 protein.
          Length = 512

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
 Frame = -2

Query: 549 NEVINRIIFQLFVSFFKSW*SA*ISGFEKGSFFWNT--PF-------KLEGNKYKLLFTY 397
           N++ + +   +  SF + W  +   G +  S +WN   P+        L+  KYK  FT 
Sbjct: 259 NDLPSEMWKNMSYSFKEVWGGSAFKGADGASRYWNRLKPYILNNKEWYLQNEKYKPQFTT 318

Query: 396 IILFLAAGWSGF--IGDICSLRPKSCI 322
               +  GW  +     +C L P S +
Sbjct: 319 FDSIIITGWQRYDHFASLCELWPTSMV 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,397,894
Number of Sequences: 27780
Number of extensions: 335511
Number of successful extensions: 721
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)