Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00293
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative si...    53   2e-07
At2g27060.1 68415.m03251 leucine-rich repeat transmembrane prote...    29   4.5  

>At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative
           similar to protoporphyrinogen IX oxidase, mitochondrial
           (PPO II) from Nicotiana tabacum [SP|O24164], Glycine
           max, AB025102, Spinacia oleracea [GI:14349153]; contains
           Pfam amine oxidase, flavin-containing domain [PF015930]
          Length = 508

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 21/67 (31%), Positives = 40/67 (59%)
 Frame = +1

Query: 526 DDSIYNFVERRFGKEIADYAISPMICGICAGDAKEISVKFLMKTLFEWEQTHGGVVKGLM 705
           ++S+  F +R FG+E+ DY I P + G  A D   +S+K     L+  E++ G ++ G +
Sbjct: 153 EESVSEFFQRHFGQEVVDYLIDPFVGGTSAADPDSLSMKHSFPDLWNVEKSFGSIIVGAI 212

Query: 706 KSLFSSK 726
           ++ F++K
Sbjct: 213 RTKFAAK 219


>At2g27060.1 68415.m03251 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1007

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 365 PDHPAARNRMIYVNNNLYLLPSSLK 439
           PD+P +R   + ++ NLY+  SSLK
Sbjct: 686 PDNPTSRQTSMRLDGNLYIFDSSLK 710


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,476,407
Number of Sequences: 28952
Number of extensions: 313825
Number of successful extensions: 736
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)