Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00292
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    26   0.36 
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    23   2.5  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   5.8  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -1

Query: 672 WKLSSLPMLP--SVTPKVSMASRKSDSSCSFCWRSF 571
           WK+      P  SV+P+V  +SR    +C  C RSF
Sbjct: 109 WKVEEDSPSPTSSVSPEVKDSSRDRPFTCEVCNRSF 144


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory
          receptor candidate 60 protein.
          Length = 364

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 29 VNIRLLGLRQYYVICSLFFNP 91
          VN+ L GL  +Y +C +  NP
Sbjct: 9  VNLGLNGLIDWYTVCLVPLNP 29


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 679 SWVEIVKFTNVTFCYTKGFH 620
           SW EI  F NV+   TK F+
Sbjct: 60  SWTEINAFANVSPSKTKFFN 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,058
Number of Sequences: 336
Number of extensions: 2762
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)