Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00292
(726 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0) 73 2e-13
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 32 0.54
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 31 0.95
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 29 2.9
SB_39611| Best HMM Match : TEP1_N (HMM E-Value=0.67) 29 5.1
SB_3579| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32) 28 8.9
SB_9402| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1283
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/69 (52%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Frame = +2
Query: 527 EKTAEEMTPEQKLAEKLRQQKLQEESDLRLAMETFGV---TEGNIGKLDNFHPTTKEEYT 697
E+ +E+TPE+++AEKLR+QK+ EESDL +AM+TFGV E + LD+ P+TKEE+T
Sbjct: 1181 EEEDKELTPEEQMAEKLRRQKIVEESDLLVAMDTFGVGTQEEASRTGLDSMIPSTKEEFT 1240
Query: 698 EFADLLTKK 724
E++ LL +K
Sbjct: 1241 EYSKLLVEK 1249
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 291 DADNFEPKLPTTLAASNKWEGEDEDDNV 374
D + FEP ++KWEGEDEDD++
Sbjct: 1097 DDEKFEPGEVPADGVTDKWEGEDEDDDI 1124
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 31.9 bits (69), Expect = 0.54
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 298 SASHDTSIFRTPESAPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFLDNNKTQV 134
S ++T++ P + SP + N TT+DS +SLTR L S + + T +
Sbjct: 507 SVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSLLSTTLIPSISTSI 562
Score = 31.9 bits (69), Expect = 0.54
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 298 SASHDTSIFRTPESAPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFLDNNKTQV 134
S ++T++ P + SP + N TT+DS +SLTR L S + + T +
Sbjct: 708 SVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSLLSTTLIPSISTSI 763
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -3
Query: 331 ANVVGSLGSKLSASHDTSIFRTPESAPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFL 155
AN+ L S S ++T++ P + SP + N TT+DS +SLTR S +
Sbjct: 95 ANITMILPST-SVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLI 153
Query: 154 DNNKTQV 134
+ T +
Sbjct: 154 PSISTSI 160
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 298 SASHDTSIFRTPESAPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFLDNNKTQV 134
S ++T++ P + SP + N TT+DS +SLTR S + + T +
Sbjct: 306 SVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIPSISTSI 361
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 31.9 bits (69), Expect = 0.54
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 298 SASHDTSIFRTPESAPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFLDNNKTQV 134
S ++T++ P + SP + N TT+DS +SLTR L S + + T +
Sbjct: 490 SVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSLLSTTLIPSISTSI 545
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 298 SASHDTSIFRTPESAPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFLDNNKTQV 134
S ++T++ P + SP + N TT+DS +SLTR S + + T +
Sbjct: 88 SVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIPSISTSI 143
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 298 SASHDTSIFRTPESAPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFLDNNKTQV 134
S ++T++ P + SP + N TT+DS +SLTR S + + T +
Sbjct: 289 SVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIPSISTSI 344
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 31.1 bits (67), Expect = 0.95
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 298 SASHDTSIFRTPESAPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFLDNNKTQV 134
S ++T+ P + SP + N TT+DS +SLTR L S + + T +
Sbjct: 708 SVPYNTTFIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSLLSTTLIPSISTSI 763
Score = 31.1 bits (67), Expect = 0.95
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 298 SASHDTSIFRTPESAPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFLDNNKTQV 134
S ++T++ P + SP + N TT+DS +SLTR L S + + T +
Sbjct: 1110 SVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSLLSTTLIPSISTSM 1165
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 298 SASHDTSIFRTPESAPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFLDNNKTQV 134
S ++T++ P + SP + N TT+DS +SLTR L S + + T +
Sbjct: 909 SVPYNTTLIPGPNATSTAATTMSPTYVANMTTLDSSVSLTRSLLSTTLIPSISTSI 964
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -3
Query: 298 SASHDTSIFRTPESAPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFLDNNKTQV 134
S ++T P + SP + N TT+DS +SLTR L S + + T +
Sbjct: 1713 SVPYNTMFIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSLLSTTLIPSISTSI 1768
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 298 SASHDTSIFRTPESAPN*YENFSPEH-QNRTTIDSDLSLTRCLQS 167
S ++T++ P + SP + N TT+DS +SLTR L S
Sbjct: 1914 SVPYNTTLIPAPNATSTAATKMSPSYVANMTTLDSSVSLTRSLLS 1958
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 298 SASHDTSIFRTPESAPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFLDNNKTQV 134
S ++T++ P + SP + N TT+DS +SLTR S + + T +
Sbjct: 105 SVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIPSISTSI 160
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 298 SASHDTSIFRTPESAPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFLDNNKTQV 134
S ++T++ P + SP + N TT+DS +SLTR S + + T +
Sbjct: 306 SVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIPSISTSI 361
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 298 SASHDTSIFRTPESAPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFLDNNKTQV 134
S ++T++ P + SP + N TT+DS +SLTR S + + +T +
Sbjct: 1512 SVPYNTTLIPGPNATSTAATTMSPSYVANMTTLDSTVSLTRSSLSTTLIPSIRTSI 1567
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 298 SASHDTSIFRTPESAPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFLDNNKTQV 134
S ++T++ P + SP + N TT+DS +SLTR S + + T +
Sbjct: 1311 SVPYNTTLIPGPNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIPSISTSI 1366
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 298 SASHDTSIFRTPESAPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFLDNNKTQV 134
S ++T++ P + SP + N TT+DS +SLTR S + + T +
Sbjct: 417 SVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIPSISTSI 472
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 298 SASHDTSIFRTPESAPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFLDNNKTQV 134
S ++T++ P + SP + N TT+DS +SLTR S + + T +
Sbjct: 618 SVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIPSISTSI 673
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 298 SASHDTSIFRTPESAPN*YENFSPEH-QNRTTIDSDLSLTRCLQSRRFLDNNKTQV 134
S ++T++ P + SP + N TT+DS +SLTR S + + T +
Sbjct: 216 SVPYNTTLIPGPNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIPSISTSI 271
>SB_39611| Best HMM Match : TEP1_N (HMM E-Value=0.67)
Length = 565
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 285 TRPFLGLQNQRRINMKTFHLNTKIGQLST 199
T+PF+GL +RR+ + TF L K ST
Sbjct: 513 TKPFVGLTGRRRLTLITFELFRKKSLTST 541
>SB_3579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 28.7 bits (61), Expect = 5.1
Identities = 9/35 (25%), Positives = 25/35 (71%)
Frame = +2
Query: 545 MTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGN 649
++PE ++ ++LRQ+ L++ S +++ ++ G+ G+
Sbjct: 34 LSPENRVVQQLRQELLKKSSGIKILPKSEGIPNGD 68
>SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32)
Length = 326
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 627 VSMASRKSDSSCSFCWRSFSANFCSGVISSAVFSVT 520
V +AS+ DSS FC+ + N C ++ S VT
Sbjct: 12 VLIASQIQDSSGGFCYEKYKNNSCRSLLKSGGKRVT 47
>SB_9402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 249 FGADSGVLKMDVSWDADNFEPKLPTTLAASNKW 347
FG S LK++V D DN+ L T+ +W
Sbjct: 155 FGQQSTTLKLNVLSDRDNYHVVLVPTIPCPGRW 187
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,337,677
Number of Sequences: 59808
Number of extensions: 360549
Number of successful extensions: 1145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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