Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00292
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039711-2|AAB96710.1|  416|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z49909-5|CAD59140.1|  594|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z49909-4|CAA90108.1|  876|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AY303577-1|AAP57299.1|  876|Caenorhabditis elegans cell death-re...    30   1.9  
Z81513-8|CAB04181.1|  354|Caenorhabditis elegans Hypothetical pr...    29   3.4  

>AF039711-2|AAB96710.1|  416|Caenorhabditis elegans Hypothetical
           protein F49D11.4 protein.
          Length = 416

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 165 RLWRHLVSDKSLSIVVRFWCSGE 233
           RLWRH  + K L+ V+R W S +
Sbjct: 311 RLWRHSFTPKGLNQVIRLWLSSD 333


>Z49909-5|CAD59140.1|  594|Caenorhabditis elegans Hypothetical
           protein C14A4.4b protein.
          Length = 594

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -1

Query: 669 KLSSLPMLPSVTPKVSMASRKSDSSCSFCWRSFSANFCSGVISSAVFSVTRRSASHVLV 493
           +L  +  +P    K +  +RK+++  S   R+FSAN   G + +  F   R  A+ ++V
Sbjct: 130 ELDEIVKVPEFITKAAPTNRKTEAEVSAAMRTFSANI--GTVLAEKFRERREEAAQMVV 186


>Z49909-4|CAA90108.1|  876|Caenorhabditis elegans Hypothetical
           protein C14A4.4a protein.
          Length = 876

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -1

Query: 669 KLSSLPMLPSVTPKVSMASRKSDSSCSFCWRSFSANFCSGVISSAVFSVTRRSASHVLV 493
           +L  +  +P    K +  +RK+++  S   R+FSAN   G + +  F   R  A+ ++V
Sbjct: 130 ELDEIVKVPEFITKAAPTNRKTEAEVSAAMRTFSANI--GTVLAEKFRERREEAAQMVV 186


>AY303577-1|AAP57299.1|  876|Caenorhabditis elegans cell
           death-related nuclease 3 protein.
          Length = 876

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -1

Query: 669 KLSSLPMLPSVTPKVSMASRKSDSSCSFCWRSFSANFCSGVISSAVFSVTRRSASHVLV 493
           +L  +  +P    K +  +RK+++  S   R+FSAN   G + +  F   R  A+ ++V
Sbjct: 130 ELDEIVKVPEFITKAAPTNRKTEAEVSAAMRTFSANI--GTVLAEKFRERREEAAQMVV 186


>Z81513-8|CAB04181.1|  354|Caenorhabditis elegans Hypothetical
           protein F26D2.11 protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
 Frame = -2

Query: 659 VYQCYLLLHQRFPWLVANLILPVASAG------EVSQPTSALESFLLQSSLSRDVQLLTF 498
           +Y+  LL+      L+ ++ILP+ + G      E  + + +++S        R ++L+TF
Sbjct: 210 IYEIDLLIEGVLLELIPSIILPITTIGLVKDLKEAQKNSMSIKSSTKSHDTLRSIKLVTF 269

Query: 497 LSLSF 483
           +++SF
Sbjct: 270 MTISF 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,534,939
Number of Sequences: 27780
Number of extensions: 273550
Number of successful extensions: 961
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)