Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00292
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66070.1 68414.m07499 translation initiation factor-related s...    51   7e-07
At5g37475.1 68418.m04510 translation initiation factor-related s...    40   0.001
At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ...    29   3.1  
At4g27850.1 68417.m03999 proline-rich family protein contains pr...    28   5.5  
At3g47440.1 68416.m05158 major intrinsic family protein / MIP fa...    28   5.5  
At3g44300.1 68416.m04757 nitrilase 2 (NIT2) identical to SP|P329...    28   5.5  
At5g23880.1 68418.m02805 cleavage and polyadenylation specificit...    28   7.2  
At1g61840.1 68414.m06978 DC1 domain-containing protein similar t...    28   7.2  
At3g44320.1 68416.m04760 nitrilase 3 (NIT3) identical to SP|P460...    27   9.6  
At1g76770.1 68414.m08934 heat shock protein-related contains sim...    27   9.6  

>At1g66070.1 68414.m07499 translation initiation factor-related
           similar to Eukaryotic translation initiation factor 3
           subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
           (Swiss-Prot:O75822) [Homo sapiens]
          Length = 226

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 25/65 (38%), Positives = 41/65 (63%)
 Frame = +2

Query: 530 KTAEEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKLDNFHPTTKEEYTEFAD 709
           K A +  P   +AEKLRQQ+L EE+D R   E FGV + +   LD F P ++ ++ E+A+
Sbjct: 76  KEAPKEKPLDPIAEKLRQQRLVEEADYRATAELFGVKDDD-KNLDMFIPKSESDFLEYAE 134

Query: 710 LLTKK 724
           +++ +
Sbjct: 135 MISHR 139


>At5g37475.1 68418.m04510 translation initiation factor-related
           similar to Eukaryotic translation initiation factor 3
           subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
           (Swiss-Prot:O75822) [Homo sapiens]
          Length = 225

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
 Frame = +2

Query: 551 PEQKLAEKLRQQKLQEESDLRLAMETFGV-TEGNIGKLDNFHPTTKEEYTEFADLLTKK 724
           P   +AEKLR Q+L EE+D +   E FGV TE     +D   P ++ ++ ++A+L++++
Sbjct: 82  PLDPIAEKLRMQRLVEEADYQSTAELFGVKTEEK--SVDMLIPKSESDFLDYAELISQR 138



 Score = 32.3 bits (70), Expect = 0.34
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 288 WDADNFEPKLPTTLAASNKWEGEDEDDN 371
           W+A++F+P LP+ +   + W+ ED D+N
Sbjct: 4   WEAEDFQP-LPSKVELKSNWDDEDVDEN 30


>At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ
           domain-containing protein contains Pfam domain, PF00023:
           Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
          Length = 600

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 533 TAEEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKLDNFHPTT 682
           + EE TPE++L +K R  +LQE       M+TF   +   GK     PT+
Sbjct: 527 SVEEDTPEKRLQKKQRYMELQE-----TLMKTFSEDKEECGKSSTPKPTS 571


>At4g27850.1 68417.m03999 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 577

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 523 DREDCRRNDSRAEVG*ETSPAEATGRIRFATSHGNLWC 636
           +RE+   N+S+ E     SP EA   IR   +H NL+C
Sbjct: 28  EREENNNNESQEETRTSRSPNEALDEIRRQQTH-NLYC 64


>At3g47440.1 68416.m05158 major intrinsic family protein / MIP
           family protein contains Pfam profile: MIP PF00230
          Length = 256

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -1

Query: 708 SANSVYSSFVVGWKLSSLPMLPSVTPKVSMASRKSDSSCSFCWRSFSANFCSGVISSAVF 529
           +A ++ SS  + W +S   + P+VT  +++A R S  +  F W S      + V++  V 
Sbjct: 67  NALALSSSVYISWNVSGGHVNPAVTFAMAVAGRISVPTAMFYWTS---QMIASVMACLVL 123

Query: 528 SVT 520
            VT
Sbjct: 124 KVT 126


>At3g44300.1 68416.m04757 nitrilase 2 (NIT2) identical to SP|P32962
           Nitrilase 2 (EC 3.5.5.1) {Arabidopsis thaliana}
          Length = 339

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 365 ILVFPFPFVGGCQRGREFGLEV 300
           ++VFP  F+GG  RG  FGL V
Sbjct: 53  LVVFPEAFIGGYPRGFRFGLGV 74


>At5g23880.1 68418.m02805 cleavage and polyadenylation specificity
           factor identical to cleavage and polyadenylation
           specificity factor [Arabidopsis thaliana]
           SWISS-PROT:Q9LKF9
          Length = 739

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 608 NLILPVASAGEVSQPTSALESFLLQSSLSRDVQLLTFLSLS 486
           N++LPV +AG V +    LE    Q   S  +  LT++S S
Sbjct: 232 NVLLPVDTAGRVLELLLILEQHWSQRGFSFPIYFLTYVSSS 272


>At1g61840.1 68414.m06978 DC1 domain-containing protein similar to
           hypothetical protein GI:3184279 from [Arabidopsis
           thaliana]; contains Pfam profile PF03107: DC1 domain
          Length = 814

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 186 SDKSLSIVVRFWCSGEKFSY*FGAD 260
           SD+ LS++  FWC+ ++F+   G D
Sbjct: 278 SDEDLSVLPLFWCNNKEFNVDGGCD 302


>At3g44320.1 68416.m04760 nitrilase 3 (NIT3) identical to SP|P46010
           Nitrilase 3 (EC 3.5.5.1) {Arabidopsis thaliana}
          Length = 346

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 365 ILVFPFPFVGGCQRGREFGLEV 300
           +++FP  F+GG  RG  FGL V
Sbjct: 60  LVLFPEAFIGGYPRGFRFGLAV 81


>At1g76770.1 68414.m08934 heat shock protein-related contains
           similarity to 17.9 kDa heat-shock protein [Helianthus
           annuus] gi|11990130|emb|CAB55634
          Length = 244

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +2

Query: 518 LVTEKTAEEMTPEQKLAEKLRQQKLQEESD 607
           +V EKT E+  PE+++ E+ + ++  EE++
Sbjct: 150 IVEEKTEEKTEPEEEIKEETKPEEENEEAE 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,674,533
Number of Sequences: 28952
Number of extensions: 250733
Number of successful extensions: 812
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)