Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00291
(630 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 140 3e-32
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 87 3e-16
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 76 8e-13
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 75 2e-12
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 74 3e-12
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 72 1e-11
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 71 3e-11
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 68 2e-10
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 67 4e-10
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 65 2e-09
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 64 2e-09
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 62 1e-08
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 60 4e-08
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 60 6e-08
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 60 6e-08
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 59 8e-08
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 58 2e-07
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 57 3e-07
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 56 7e-07
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 56 9e-07
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 54 2e-06
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 52 9e-06
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 52 1e-05
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 51 2e-05
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 51 3e-05
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 50 6e-05
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 48 2e-04
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 3e-04
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 47 3e-04
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 47 4e-04
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 46 6e-04
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 46 7e-04
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 46 7e-04
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 46 0.001
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 44 0.002
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 43 0.007
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 43 0.007
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 42 0.009
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 42 0.012
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 42 0.016
UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4; Chloroflexac... 41 0.021
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 41 0.021
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 41 0.028
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 41 0.028
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 41 0.028
UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1; ... 40 0.049
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 40 0.049
UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas ... 40 0.049
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 40 0.049
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 40 0.065
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 39 0.086
UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyosteliu... 39 0.086
UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11; Mollicu... 39 0.11
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 39 0.11
UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1... 38 0.20
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 38 0.20
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 38 0.20
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 38 0.20
UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n... 38 0.20
UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia... 37 0.35
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 37 0.46
UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5; Alphapro... 36 0.61
UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86; Bacteri... 36 0.61
UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35; Bacteri... 36 0.61
UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.61
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 36 0.80
UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25; Bacteri... 36 0.80
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 36 1.1
UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 1.1
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 1.1
UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular or... 35 1.9
UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1; Pl... 35 1.9
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 35 1.9
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 35 1.9
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 34 2.4
UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;... 34 3.2
UniRef50_A2ZWP2 Cluster: Putative uncharacterized protein; n=1; ... 34 3.2
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 33 4.3
UniRef50_Q9Y894 Cluster: CBHII; n=1; Volvariella volvacea|Rep: C... 33 4.3
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 33 4.3
UniRef50_UPI000023DE23 Cluster: hypothetical protein FG05327.1; ... 33 5.7
UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative; ... 33 5.7
UniRef50_Q72JR6 Cluster: Isoleucyl-tRNA synthetase; n=3; Thermus... 33 5.7
UniRef50_A7J6Z4 Cluster: Putative uncharacterized protein n290L;... 33 7.5
UniRef50_Q9F848 Cluster: CmlH; n=1; Streptomyces venezuelae|Rep:... 33 7.5
UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2; ... 32 9.9
UniRef50_A6SNP0 Cluster: Putative uncharacterized protein; n=1; ... 32 9.9
UniRef50_A0B7K6 Cluster: Thiamine biosynthesis protein; n=1; Met... 32 9.9
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 140 bits (339), Expect = 3e-32
Identities = 67/73 (91%), Positives = 70/73 (95%)
Frame = +1
Query: 289 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 468
DE +MKLDY+LGLKIEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRVRKQVVNIPSF
Sbjct: 88 DEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSF 147
Query: 469 IVRLDSGKHIDFS 507
IVRLDS KHIDFS
Sbjct: 148 IVRLDSQKHIDFS 160
Score = 133 bits (321), Expect = 4e-30
Identities = 61/69 (88%), Positives = 67/69 (97%)
Frame = +2
Query: 50 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 229
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKD
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 230 PKRLFEGNA 256
P+RLFEGNA
Sbjct: 68 PRRLFEGNA 76
Score = 48.8 bits (111), Expect = 1e-04
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = +3
Query: 510 KSPFGGGRPGRVKRKNLRKGQGG 578
+SP+GGGRPGRVKRKN +KGQGG
Sbjct: 162 RSPYGGGRPGRVKRKNAKKGQGG 184
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 87.0 bits (206), Expect = 3e-16
Identities = 42/72 (58%), Positives = 56/72 (77%)
Frame = +1
Query: 298 QMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 477
Q KL++VL LK E+ LERRLQT V++ G AKSIHHAR+LIR + I+V KQVV++PSF+VR
Sbjct: 90 QNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQVVDVPSFLVR 149
Query: 478 LDSGKHIDFSRN 513
++S I + N
Sbjct: 150 VESEPLIQLADN 161
Score = 78.2 bits (184), Expect = 2e-13
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = +2
Query: 56 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 235
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDPK
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
Query: 236 RLFEGNA 256
RL EG A
Sbjct: 69 RLLEGAA 75
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 75.8 bits (178), Expect = 8e-13
Identities = 33/58 (56%), Positives = 44/58 (75%)
Frame = +2
Query: 44 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 217
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLAL 61
Score = 50.8 bits (116), Expect = 3e-05
Identities = 25/56 (44%), Positives = 36/56 (64%)
Frame = +1
Query: 307 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 474
+D VL LK+ LERRLQT V++ GLA+S AR L+ HI + + V +P ++V
Sbjct: 94 IDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLV 149
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 74.5 bits (175), Expect = 2e-12
Identities = 37/68 (54%), Positives = 48/68 (70%)
Frame = +2
Query: 53 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 232
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 233 KRLFEGNA 256
+R+FEG A
Sbjct: 59 RRIFEGEA 66
Score = 64.9 bits (151), Expect = 2e-09
Identities = 31/47 (65%), Positives = 35/47 (74%)
Frame = +1
Query: 292 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 432
E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 79 EGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 73.7 bits (173), Expect = 3e-12
Identities = 35/67 (52%), Positives = 49/67 (73%)
Frame = +1
Query: 307 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 486
L+ VL L I +LERRLQ +VF AGLAKS+HHAR+LI R I ++ Q+V++P F+VR D
Sbjct: 98 LNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADK 157
Query: 487 GKHIDFS 507
I+++
Sbjct: 158 EPLIEYN 164
Score = 56.0 bits (129), Expect = 7e-07
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +2
Query: 56 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 214
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT 59
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 71.7 bits (168), Expect = 1e-11
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +2
Query: 44 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 220
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQ 62
Score = 53.2 bits (122), Expect = 5e-06
Identities = 27/67 (40%), Positives = 39/67 (58%)
Frame = +1
Query: 307 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 486
+D VL LK+E L+RRLQTQV++ G A+S AR I HI + + V IP + V
Sbjct: 94 IDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRVTIPGYTVSAKE 153
Query: 487 GKHIDFS 507
+ I ++
Sbjct: 154 QEEISYA 160
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 70.5 bits (165), Expect = 3e-11
Identities = 35/83 (42%), Positives = 57/83 (68%)
Frame = -1
Query: 510 SREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQEVLN 331
S EVNVL R Q+ ++ WDV +LL ++N+ L DQ+S +++ L Q L LQ++ QE+ N
Sbjct: 32 SSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQSSFQEIFN 91
Query: 330 LQTKHIIEFHLFFIQYSNTNQTT 262
LQ++ II+ L F Q +N++Q++
Sbjct: 92 LQSQDIIQLLLVFRQDTNSHQSS 114
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 68.1 bits (159), Expect = 2e-10
Identities = 32/90 (35%), Positives = 55/90 (61%)
Frame = +2
Query: 53 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 232
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLE 69
Query: 233 KRLFEGNAFYVVWFVLEYWMKNR*NSIMCL 322
K ++ ++WF +Y N N CL
Sbjct: 70 K--IPSQSYGILWFCYKYNFMN--NMTFCL 95
Score = 68.1 bits (159), Expect = 2e-10
Identities = 33/69 (47%), Positives = 47/69 (68%)
Frame = +1
Query: 307 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 486
L+ ++ + + L RRLQT V + L+K+IH ARILI +HI+V+ Q+VN PSF+VR D+
Sbjct: 95 LESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVKNQIVNKPSFLVRKDN 154
Query: 487 GKHIDFSRN 513
I FS N
Sbjct: 155 EIFISFSLN 163
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 66.9 bits (156), Expect = 4e-10
Identities = 36/67 (53%), Positives = 46/67 (68%)
Frame = +1
Query: 313 YVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 492
+ GL+I F E++LQTQVF+ L KSI HA +L+ HIR+ KQVV+I F V LDS K
Sbjct: 102 WAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSRK 160
Query: 493 HIDFSRN 513
H DF R+
Sbjct: 161 HTDFFRH 167
Score = 48.0 bits (109), Expect = 2e-04
Identities = 24/35 (68%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Frame = +2
Query: 152 EVWRVKYTLARIRKAARE-LLTLEEKDPKRLFEGN 253
EVWRVK+TL +IRKA E LL L EKDP+ LFE N
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDN 75
Score = 36.3 bits (80), Expect = 0.61
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 522 GGGRPGRVKRKNLRKGQGG 578
GGG PG VKRKN++KG+GG
Sbjct: 171 GGGYPGSVKRKNVKKGRGG 189
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 64.9 bits (151), Expect = 2e-09
Identities = 33/69 (47%), Positives = 45/69 (65%)
Frame = +1
Query: 307 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 486
LD VL L +ED LERRLQT VF+ GLA++ AR LI HI V +VV PS++V ++
Sbjct: 91 LDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEE 150
Query: 487 GKHIDFSRN 513
I +++N
Sbjct: 151 EDKISYAKN 159
Score = 58.0 bits (134), Expect = 2e-07
Identities = 24/54 (44%), Positives = 37/54 (68%)
Frame = +2
Query: 53 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 214
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS 61
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 64.5 bits (150), Expect = 2e-09
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +2
Query: 44 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL 208
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYL 58
Score = 53.6 bits (123), Expect = 4e-06
Identities = 34/92 (36%), Positives = 45/92 (48%)
Frame = +1
Query: 307 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 486
LD VL L +E+ L+RRLQT VFK LA S AR LI HI V + V +P +V
Sbjct: 92 LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGRRVTVPGMLVEAQY 151
Query: 487 GKHIDFSRNLHSVEVVLDVSRGRTSARDRVAE 582
I + N + + + S +RV E
Sbjct: 152 EDTIAYYENSPIANELHPIRQALLSPAERVKE 183
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 62.1 bits (144), Expect = 1e-08
Identities = 30/62 (48%), Positives = 41/62 (66%)
Frame = +1
Query: 289 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 468
++ ++LD +L L + LERRLQT V++ GLAKSIHHAR LI H+ V + V P F
Sbjct: 86 EDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGF 145
Query: 469 IV 474
+V
Sbjct: 146 LV 147
Score = 51.6 bits (118), Expect = 2e-05
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +2
Query: 74 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDPKRLFE 247
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P +
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEMPF 75
Query: 248 GNAFYVVWFV 277
Y + F+
Sbjct: 76 KEKLYKMGFI 85
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 60.1 bits (139), Expect = 4e-08
Identities = 30/67 (44%), Positives = 44/67 (65%)
Frame = +1
Query: 304 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 483
+LD VL L ++D LERRLQT + + GLAK++ AR I HI V +VV+ PS++V+ +
Sbjct: 87 ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKE 146
Query: 484 SGKHIDF 504
I+F
Sbjct: 147 EEDKIEF 153
Score = 41.5 bits (93), Expect = 0.016
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +2
Query: 74 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 223
P P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQ 59
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 59.7 bits (138), Expect = 6e-08
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +2
Query: 155 VWRVKYTLARIRKAARELLTLEEKDPKRLF 244
VWRVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 59.7 bits (138), Expect = 6e-08
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +2
Query: 44 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 211
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLL 59
Score = 56.4 bits (130), Expect = 5e-07
Identities = 27/66 (40%), Positives = 39/66 (59%)
Frame = +1
Query: 307 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 486
+D +L LK E+ LERRLQTQV + GLA+++ AR I HI + + IP +V +
Sbjct: 98 VDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKED 157
Query: 487 GKHIDF 504
HI +
Sbjct: 158 EMHIGY 163
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 59.3 bits (137), Expect = 8e-08
Identities = 32/66 (48%), Positives = 42/66 (63%)
Frame = +1
Query: 307 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 486
LD +LGL E++LERRLQT V+K GLA++I+ AR LI HI + + V P +IV
Sbjct: 90 LDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGE 149
Query: 487 GKHIDF 504
IDF
Sbjct: 150 EDLIDF 155
Score = 48.8 bits (111), Expect = 1e-04
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +2
Query: 44 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 217
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLAL 61
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 57.6 bits (133), Expect = 2e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +2
Query: 44 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 211
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALL 59
Score = 54.4 bits (125), Expect = 2e-06
Identities = 24/61 (39%), Positives = 39/61 (63%)
Frame = +1
Query: 292 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 471
++ KL+ VL LK++D +ERRLQT +++ G A SI AR I HI + + + +P ++
Sbjct: 91 KEDAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGRKITVPGYL 150
Query: 472 V 474
V
Sbjct: 151 V 151
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 57.2 bits (132), Expect = 3e-07
Identities = 32/55 (58%), Positives = 34/55 (61%)
Frame = -2
Query: 503 KSMCLPESRRTINDGMFTTCLRTRICLCRIKILA*WMDFARPALNTCVCRRRSKK 339
KSMC S RT G FT CL TRI RIK A D ARP+L T VC+RRSKK
Sbjct: 64 KSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKTSVCKRRSKK 118
Score = 34.7 bits (76), Expect = 1.9
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -3
Query: 163 APYFTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL 59
AP +LVA+ L+DDLQL V+ L +RT+R RL
Sbjct: 167 APQLSLVAKAELTDDLQLGVEAILLERTSRLLERL 201
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 56.0 bits (129), Expect = 7e-07
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = +1
Query: 304 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 483
KL+ VL L +ED L RRLQ+ VFK GL+ + AR+ + HI + + +N P +V
Sbjct: 88 KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKA 147
Query: 484 SGKHIDF 504
++IDF
Sbjct: 148 DEENIDF 154
Score = 49.2 bits (112), Expect = 8e-05
Identities = 19/54 (35%), Positives = 35/54 (64%)
Frame = +2
Query: 59 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 220
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L ++
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMD 62
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 55.6 bits (128), Expect = 9e-07
Identities = 31/69 (44%), Positives = 39/69 (56%)
Frame = +1
Query: 307 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 486
LD VL L +E LERRLQT VF+ GLA + AR I HI V + +N PS++V L
Sbjct: 90 LDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGKKINAPSYLVPLVE 149
Query: 487 GKHIDFSRN 513
I + N
Sbjct: 150 EDAISYMPN 158
Score = 54.4 bits (125), Expect = 2e-06
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +2
Query: 44 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 214
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLIS 60
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 54.4 bits (125), Expect = 2e-06
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +1
Query: 289 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 396
D ++ KLDYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 52.4 bits (120), Expect = 9e-06
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = +2
Query: 44 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 223
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L +
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQ 63
Query: 224 KDPKR 238
+ +R
Sbjct: 64 EVRER 68
Score = 49.6 bits (113), Expect = 6e-05
Identities = 31/96 (32%), Positives = 46/96 (47%)
Frame = +1
Query: 295 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 474
K LD VL L++ D L RRLQT V K + + AR + HI + +VV IPS+ V
Sbjct: 85 KDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISDRVVTIPSYTV 144
Query: 475 RLDSGKHIDFSRNLHSVEVVLDVSRGRTSARDRVAE 582
++ I + ++ R +AR+ AE
Sbjct: 145 YVEEEGDIKLTGGSAFATILEKSKRAEAAAREAAAE 180
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 52.0 bits (119), Expect = 1e-05
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +2
Query: 41 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 211
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL 59
Score = 50.4 bits (115), Expect = 3e-05
Identities = 26/70 (37%), Positives = 40/70 (57%)
Frame = +1
Query: 295 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 474
++ +LD VL L++ D LERRLQT V++ GLA ++ AR + H+ V V PS+ V
Sbjct: 82 EEERLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTV 141
Query: 475 RLDSGKHIDF 504
+ + F
Sbjct: 142 PVSEENTLAF 151
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 51.2 bits (117), Expect = 2e-05
Identities = 29/61 (47%), Positives = 37/61 (60%)
Frame = +1
Query: 292 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 471
E L+ VL + FLERRLQT VFK GLA++I AR LI I V + V+IP ++
Sbjct: 82 ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLITHGFIAVNMKRVSIPGYM 141
Query: 472 V 474
V
Sbjct: 142 V 142
Score = 40.3 bits (90), Expect = 0.037
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +2
Query: 59 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 214
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLS 60
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 50.8 bits (116), Expect = 3e-05
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +1
Query: 289 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 468
+E KL V GL + ++LERRL+ V++ G AK+ AR ++ HI V + VNI SF
Sbjct: 69 EEAARKLG-VTGLTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAVNGRRVNIASF 127
Query: 469 IVRL-DSGKHIDFSRNLHSVEVVLD 540
V++ D I+ S+N+ +++ ++
Sbjct: 128 RVKVGDIVSVIENSKNVELIKLAVE 152
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 49.6 bits (113), Expect = 6e-05
Identities = 28/72 (38%), Positives = 41/72 (56%)
Frame = +1
Query: 322 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 501
G + LERRL VF+AG A ++ AR L+ RH+R+ + VNIPS +RL+ G I
Sbjct: 85 GETLLQLLERRLDNVVFRAGFAPTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEIT 142
Query: 502 FSRNLHSVEVVL 537
++ +VL
Sbjct: 143 IKPESLNLPIVL 154
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 47.6 bits (108), Expect = 2e-04
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +1
Query: 292 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 471
++ KL V G + LE RL V++ G A + AR L+ HIR+ + NIPS+
Sbjct: 77 DRAAKLSGVTGNNLMVLLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPSYS 136
Query: 472 VRL-DSGKHIDFSRNLHSVEVVLDVSRGRT 558
VR D D SR+ V+ LD +RG T
Sbjct: 137 VRPGDVVSLKDSSRSKALVQRFLDGARGET 166
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 3e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +2
Query: 53 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 211
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 47.2 bits (107), Expect = 3e-04
Identities = 19/53 (35%), Positives = 34/53 (64%)
Frame = +1
Query: 319 LGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 477
+G + LERRL +++AG SI+ AR+L+ +H+ V ++ NI S++V+
Sbjct: 123 IGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQ 175
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 46.8 bits (106), Expect = 4e-04
Identities = 27/75 (36%), Positives = 40/75 (53%)
Frame = +1
Query: 316 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 495
V G + LERRL V++ G + S AR L+ H+ V + VNIPSF+V G
Sbjct: 82 VTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQ 139
Query: 496 IDFSRNLHSVEVVLD 540
I+F + +++ V D
Sbjct: 140 IEFRQKSRNLDAVAD 154
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 46.4 bits (105), Expect = 6e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +1
Query: 316 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 468
+ G + F+E RL V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 82 ITGENLLKFIEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 46.0 bits (104), Expect = 7e-04
Identities = 23/73 (31%), Positives = 42/73 (57%)
Frame = +1
Query: 295 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 474
K +++ + G + LE RL +F+ GLA++ AR ++ +H+ V + VNIPS++V
Sbjct: 53 KAKQMEGMTGENLMRILESRLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLV 112
Query: 475 RLDSGKHIDFSRN 513
+ +G I+ N
Sbjct: 113 K--AGDTIEIKEN 123
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 46.0 bits (104), Expect = 7e-04
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +1
Query: 322 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHI- 498
G+ LERRL V++ GLA + AR L+ HI V + V+IPS+ V++ +
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDIPSYEVKVGQEISLR 143
Query: 499 DFSRNLHSVEVVLD 540
D S+NL V+ LD
Sbjct: 144 DKSKNLQQVKDALD 157
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 45.6 bits (103), Expect = 0.001
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +1
Query: 295 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 474
K K+ G + FLE RL VF+ +A +I AR LI HIRV + VNIPS++
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMC 151
Query: 475 R 477
+
Sbjct: 152 K 152
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 44.4 bits (100), Expect = 0.002
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +1
Query: 316 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 474
V G + LERRL VF+AG A S AR ++R +HI + + V+IPS+ V
Sbjct: 88 VAGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSYQV 140
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 42.7 bits (96), Expect = 0.007
Identities = 24/80 (30%), Positives = 40/80 (50%)
Frame = +1
Query: 316 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 495
+ G + LE RL V++ G++ + AR L+ +HI V ++VNIPS+ L G
Sbjct: 81 ITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSY--SLKPGDI 138
Query: 496 IDFSRNLHSVEVVLDVSRGR 555
+ S+E + + GR
Sbjct: 139 VSVRERSKSLEAITNSLAGR 158
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 42.7 bits (96), Expect = 0.007
Identities = 30/81 (37%), Positives = 42/81 (51%)
Frame = +1
Query: 292 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 471
+K +KL G + LE RL V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 74 KKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF- 132
Query: 472 VRLDSGKHIDFSRNLHSVEVV 534
+ +I NL S ++
Sbjct: 133 -KCKPTNNIKIKDNLVSKRII 152
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 42.3 bits (95), Expect = 0.009
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +1
Query: 322 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 474
G + +LERRL V++ G A + AR L+ H+ V + VNIPS++V
Sbjct: 89 GEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV 139
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 41.9 bits (94), Expect = 0.012
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = +1
Query: 343 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSRNLHS 522
LE RL V++ G A SI AR ++ H V + VNIPSF RL+ G +
Sbjct: 86 LESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF--RLNIGDEVVLREKSRK 143
Query: 523 VEVVLD 540
E+ ++
Sbjct: 144 TEMFVN 149
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 41.5 bits (93), Expect = 0.016
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +1
Query: 322 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 468
G + LE RL +F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 76 GQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4;
Chloroflexaceae|Rep: Ribosomal protein S4 - Roseiflexus
sp. RS-1
Length = 206
Score = 41.1 bits (92), Expect = 0.021
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +1
Query: 292 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 471
EK + G + LERRL V++ G A + AR L+ HI V + NIPS+
Sbjct: 75 EKAQRFPGETGAYLFILLERRLDNVVYRLGFATTRAQARQLVSHGHITVNGRKTNIPSYT 134
Query: 472 VRL 480
VR+
Sbjct: 135 VRV 137
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 41.1 bits (92), Expect = 0.021
Identities = 28/82 (34%), Positives = 40/82 (48%)
Frame = +1
Query: 322 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 501
G + LE RL + V +AGLA SI AR +R ++ V + +IPSF R+ G +
Sbjct: 89 GTVLLQLLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF--RVKPGSEVR 146
Query: 502 FSRNLHSVEVVLDVSRGRTSAR 567
F H V+ S R +R
Sbjct: 147 F-HAAHQKLAVVQESFSRMKSR 167
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 40.7 bits (91), Expect = 0.028
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = +1
Query: 322 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHI- 498
G + LE RL +F+ G+A +I AR L+ RHI V ++V+IPS+ I
Sbjct: 66 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSYRCNPKDVITIK 125
Query: 499 DFSRNLHSVEVVLDVSRGRTSARDRVAER 585
D R+++ + LD+S+ +++R
Sbjct: 126 DRQRSMNIITKNLDLSKKHQERSRLISKR 154
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 40.7 bits (91), Expect = 0.028
Identities = 24/72 (33%), Positives = 36/72 (50%)
Frame = +1
Query: 340 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSRNLH 519
F RRL T + + + + A I Q HIRV VVNIP++ V + HI +++
Sbjct: 116 FCRRRLATVLVQRKFCEHLKQAVTYIEQGHIRVGLDVVNIPAYHVTRELEDHITWAQGSK 175
Query: 520 SVEVVLDVSRGR 555
E V+D + R
Sbjct: 176 IKEKVVDFTGAR 187
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 40.7 bits (91), Expect = 0.028
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +1
Query: 343 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHI-DFSRNLH 519
LE RL V++ G A + AR L+ H V + VNIPS+++R + + + SR+L
Sbjct: 96 LEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLRPNDVVEVREKSRDLE 155
Query: 520 SVEVVLDVSRGRT 558
++ ++ ++ R+
Sbjct: 156 VIKKAIEANKERS 168
>UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 198
Score = 39.9 bits (89), Expect = 0.049
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1
Query: 295 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 474
K K++ V G + LE RL VF+ G A++ AR +R H V + V+IPS+ V
Sbjct: 70 KARKMNGVTGENLMIILESRLDNVVFRLGFARTRKEARQSVRHGHFTVNGKRVDIPSYRV 129
Query: 475 R 477
+
Sbjct: 130 K 130
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 39.9 bits (89), Expect = 0.049
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +1
Query: 304 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 471
K + +G + LE L +F+ G+A +I AR L+ RHI V ++V+IP +
Sbjct: 195 KAKWAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDIPRLV 250
>UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S4 - Malawimonas
jakobiformis
Length = 225
Score = 39.9 bits (89), Expect = 0.049
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +1
Query: 337 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 480
+ LERRL T +F+ A S +AR LI HI + +VN+ S +V +
Sbjct: 107 NLLERRLDTILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNI 154
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 39.9 bits (89), Expect = 0.049
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +1
Query: 322 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 468
GL + LE RL VF+ G+A +I AR L+ HI V + V IPS+
Sbjct: 83 GLALLQMLEMRLDCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 39.5 bits (88), Expect = 0.065
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +1
Query: 343 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 468
LE RL +F G+A +I AR L+ RHI V +V+IPS+
Sbjct: 54 LEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSY 95
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 39.1 bits (87), Expect = 0.086
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +1
Query: 436 VRKQVVNIPSFIVRLDSGKHIDFS 507
V +Q+VNIPSFIVRL+S KHI FS
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFS 50
>UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyostelium
discoideum|Rep: Ribosomal protein S4 - Dictyostelium
discoideum (Slime mold)
Length = 300
Score = 39.1 bits (87), Expect = 0.086
Identities = 17/77 (22%), Positives = 42/77 (54%)
Frame = +1
Query: 343 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSRNLHS 522
LE+R+ + ++G +S++ AR +I +H+ V ++ ++P +++ + G I F
Sbjct: 144 LEKRVDMVLLRSGFVRSLYEARQIINHKHLLVNGKIASLPGYMINV--GDIISFKEGSMK 201
Query: 523 VEVVLDVSRGRTSARDR 573
+++ + +G S + R
Sbjct: 202 RKLLKRLKKGLISKKSR 218
>UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11;
Mollicutes|Rep: 30S ribosomal protein S4 - Mycoplasma
gallisepticum
Length = 207
Score = 38.7 bits (86), Expect = 0.11
Identities = 22/77 (28%), Positives = 39/77 (50%)
Frame = +1
Query: 304 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 483
K+ +L + + LE RL VF+ G A + AR L+ H+ V + +IPS ++ L
Sbjct: 82 KMSGILTMNLFRTLESRLDNLVFRMGFAPTRRGARQLVSHGHVLVNGKTFDIPSALISL- 140
Query: 484 SGKHIDFSRNLHSVEVV 534
G ++ H++ +V
Sbjct: 141 -GSVVELKPRAHNLPLV 156
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 38.7 bits (86), Expect = 0.11
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +1
Query: 322 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 468
G + LE RL +F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 80 GQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S4 - Prototheca wickerhamii
Length = 511
Score = 37.9 bits (84), Expect = 0.20
Identities = 22/62 (35%), Positives = 34/62 (54%)
Frame = +1
Query: 343 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSRNLHS 522
+E+RL ++++G K+I AR R I V +V IPS I L+SG I + L S
Sbjct: 200 IEKRLDVVLYRSGFTKTIVAARQACRHSQIYVNSKVCRIPSTI--LESGDIISYKNQLDS 257
Query: 523 VE 528
++
Sbjct: 258 LK 259
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 37.9 bits (84), Expect = 0.20
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +1
Query: 343 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 477
LE R+ + ++++G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 37.9 bits (84), Expect = 0.20
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +1
Query: 292 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 471
E+ + + G + + LE RL V +AG A++I AR L+ RHI V V+ PSF
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILVDGIRVDRPSFR 135
Query: 472 V 474
V
Sbjct: 136 V 136
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 37.9 bits (84), Expect = 0.20
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = +1
Query: 292 EKQMK--LDYVLGLKIEDFL---ERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 456
E Q+K Y+ LKI + + E RL +F+ G AKSI+ AR LI I + +V
Sbjct: 61 ENQIKKYFKYIKLLKIFNLIQIIELRLDATIFRLGFAKSINQARQLITHGFIFINSILVK 120
Query: 457 IPSFIV 474
PSFI+
Sbjct: 121 KPSFIL 126
>UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Bigelowiella natans|Rep: Chloroplast 30S ribosomal
protein S4 - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 194
Score = 37.9 bits (84), Expect = 0.20
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 322 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 468
G K+ LE RL T +++ G ++ AR LI HI V + V+IP F
Sbjct: 75 GDKLLQLLEMRLDTLLYRTGFVPTVASARQLISHGHINVNGKKVDIPGF 123
>UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia
burgdorferi group|Rep: 30S ribosomal protein S4 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 209
Score = 37.1 bits (82), Expect = 0.35
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +1
Query: 316 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 477
V G + LERR+ V++AG A S HAR ++ I + + V IPS I+R
Sbjct: 85 VTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSIILR 138
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 36.7 bits (81), Expect = 0.46
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = +1
Query: 340 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSRNLH 519
F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S I +++
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASK 164
Query: 520 SVEVVLDVSRGR 555
+ V+D + R
Sbjct: 165 IKKHVMDYNNTR 176
>UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5;
Alphaproteobacteria|Rep: 30S ribosomal protein S4 -
Zymomonas mobilis
Length = 204
Score = 36.3 bits (80), Expect = 0.61
Identities = 24/66 (36%), Positives = 33/66 (50%)
Frame = +1
Query: 343 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSRNLHS 522
LERRL V++A A +I AR L+ HIRV NI S R++ G I
Sbjct: 92 LERRLDMIVYRAKFAPTIFAARQLVSHGHIRVNGVKCNIAS--RRVNPGDEISLGSKAQE 149
Query: 523 VEVVLD 540
+ +VL+
Sbjct: 150 MALVLE 155
>UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86;
Bacteria|Rep: 30S ribosomal protein S4 - Silicibacter
pomeroyi
Length = 206
Score = 36.3 bits (80), Expect = 0.61
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 322 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 477
G + LERRL V++A ++ AR + H+ V + VNIPS+ V+
Sbjct: 85 GENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVLVNGKRVNIPSYRVK 136
>UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35;
Bacteria|Rep: 30S ribosomal protein S4 - Listeria
innocua
Length = 200
Score = 36.3 bits (80), Expect = 0.61
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +1
Query: 343 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 474
LE+RL V++ GLA++ AR L+ HI V + V+IPS+ V
Sbjct: 90 LEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSYQV 133
>UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Stigeoclonium helveticum|Rep: Chloroplast 30S ribosomal
protein S4 - Stigeoclonium helveticum (Green alga)
Length = 2922
Score = 36.3 bits (80), Expect = 0.61
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +1
Query: 343 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 468
LE RL VF+ +A +I AR LI HI + K+ V IPS+
Sbjct: 109 LEMRLDNIVFRLHMAPTIKAARQLISHGHILINKKKVTIPSY 150
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 35.9 bits (79), Expect = 0.80
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 457 CSQLACGHEYAFAGSKFWHDGWTSPGQL*TPASAD 353
CS L H +FWH GW+SP Q TPA+A+
Sbjct: 90 CSSLL--HRGVLTVKQFWHVGWSSPSQSSTPAAAE 122
>UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25;
Bacteria|Rep: 30S ribosomal protein S4 - Frankia sp.
(strain CcI3)
Length = 209
Score = 35.9 bits (79), Expect = 0.80
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 322 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 468
G ++ LE RL V++ G A S AR +R H++V + V+IPS+
Sbjct: 89 GDELLKILESRLDNVVYRGGFAPSRDAARQAVRHGHVQVNGRKVDIPSY 137
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 35.5 bits (78), Expect = 1.1
Identities = 17/27 (62%), Positives = 20/27 (74%), Gaps = 3/27 (11%)
Frame = +3
Query: 513 SPFGGGRPGRVKRKNLR---KGQGGGA 584
SP GGGRPGRVK+K+L+ K GGA
Sbjct: 42 SPLGGGRPGRVKKKSLKVAAKEAAGGA 68
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 35.5 bits (78), Expect = 1.1
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +1
Query: 337 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 480
+ LE+RL VF+ G A SI AR L+ + V + VNI S I+++
Sbjct: 91 NLLEKRLDNVVFRLGFASSIPAARQLVSHGKVLVNGKKVNIGSQIIKV 138
>UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3;
Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 -
Cyanidium caldarium
Length = 192
Score = 35.5 bits (78), Expect = 1.1
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 322 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 468
GL + LE RL V++AG A ++ AR L+ H++V + V I S+
Sbjct: 82 GLALLTMLETRLDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVTIASW 130
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 35.5 bits (78), Expect = 1.1
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 340 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 474
F RRL T + K +A+ + A + Q H+RV VV P+F+V
Sbjct: 106 FCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLV 150
>UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular
organisms|Rep: Ribosomal protein S4 - Leptosira
terrestris (Pleurastrum terrestre)
Length = 221
Score = 34.7 bits (76), Expect = 1.9
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 322 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 468
G + LE RL VF+ G+A +I AR L+ HI V + V+I S+
Sbjct: 94 GETLLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGHIVVNNKKVDISSY 142
>UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribosomal protein S4,
putative - Plasmodium falciparum (isolate 3D7)
Length = 159
Score = 34.7 bits (76), Expect = 1.9
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 325 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 504
+ + F RRL +F+ ++I A I+ +IR+ V+N PSF + + HI +
Sbjct: 75 ITVSSFCRRRLAVLLFRLKFVQTIKLAITYIQHGNIRIGNNVINNPSFHINRNMEDHIKW 134
Query: 505 S 507
+
Sbjct: 135 A 135
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 34.7 bits (76), Expect = 1.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 325 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 474
+ F RRL + + +++++ HA +I H+RV VV P+F+V
Sbjct: 100 ISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVRVGTDVVKDPAFLV 149
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 34.7 bits (76), Expect = 1.9
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 122 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 238
I +YGLR++ E + + ++RK A L L+E DP R
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVR 70
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 34.3 bits (75), Expect = 2.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 384 GEVHPSCQNFDPAKAYSCPQASCEHPIIYCAP 479
G VHPSC + D + CP +CE P + C P
Sbjct: 136 GNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;
Drosophila melanogaster|Rep: lethal (2) 35Bb CG31834-PA
- Drosophila melanogaster
Length = 291
Score = 33.9 bits (74), Expect = 3.2
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +1
Query: 331 IEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 492
I DF RL TQ F+ KSIH++ +++ +KQ+ NIP FI R GK
Sbjct: 149 IADFGTARL-TQ-FRRTSTKSIHNSTASCQRQKEEKKKQIQNIPRFIPRKKKGK 200
>UniRef50_A2ZWP2 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 640
Score = 33.9 bits (74), Expect = 3.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 516 PFGGGRPGRVKRKNLRKGQGGGAPMMKRKINK 611
P GG + R +R+ R GQGGGAP +R + +
Sbjct: 188 PRGGAQARRARRRGGRVGQGGGAPERRRALQR 219
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 33.5 bits (73), Expect = 4.3
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 337 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 474
DF RRL V + + A LI+Q HI+V V+ P++IV
Sbjct: 105 DFCRRRLAIVVKAKKMVTDVTQAETLIQQGHIKVGPDVIRNPAYIV 150
>UniRef50_Q9Y894 Cluster: CBHII; n=1; Volvariella volvacea|Rep:
CBHII - Volvariella volvacea
Length = 470
Score = 33.5 bits (73), Expect = 4.3
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -2
Query: 587 WRSATLSLAEVLPLDTSRTTSTEWRFREKSMCLPESRRTINDGMFTTCLRTRIC 426
WR ++ + T+R TS W R ++ + ES + I T C+ ++C
Sbjct: 177 WRRMESLASQTMGSTTTRATSINWLLRSRNTLMSESLQVIEPDSATRCIWPQLC 230
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 33.5 bits (73), Expect = 4.3
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 89 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRL 241
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D ++L
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQL 665
>UniRef50_UPI000023DE23 Cluster: hypothetical protein FG05327.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG05327.1 - Gibberella zeae PH-1
Length = 514
Score = 33.1 bits (72), Expect = 5.7
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +1
Query: 343 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSRNLH 519
LERRL T VF+A A S+ AR + ++V + + PS+ + +D + L+
Sbjct: 160 LERRLDTAVFRAMFASSVRQARQFVIHGAVKVNGKKMVHPSYALNPGDMFQVDIEKVLY 218
>UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative;
n=2; Filobasidiella neoformans|Rep: Nam9 protein,
mitochondrial, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 317
Score = 33.1 bits (72), Expect = 5.7
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +1
Query: 343 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 474
+ERRL +F++ A+++ AR + Q H+++ QV+ P+ ++
Sbjct: 140 IERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIML 183
>UniRef50_Q72JR6 Cluster: Isoleucyl-tRNA synthetase; n=3; Thermus
thermophilus|Rep: Isoleucyl-tRNA synthetase - Thermus
thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Length = 1043
Score = 33.1 bits (72), Expect = 5.7
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +2
Query: 65 YVTPRRP-FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRL 241
Y PRR ++ L EL++ + GL++KRE+ Y + R +A RE + EK+ +
Sbjct: 76 YYAPRRAGWDTHGLPVELEVEKKLGLKSKREI--EAYGIERFNQACRESVFTYEKEWEAF 133
Query: 242 FEGNAFYV 265
E A++V
Sbjct: 134 TERIAYWV 141
>UniRef50_A7J6Z4 Cluster: Putative uncharacterized protein n290L;
n=2; Paramecium bursaria Chlorella virus A1|Rep:
Putative uncharacterized protein n290L - Chlorella virus
FR483
Length = 121
Score = 32.7 bits (71), Expect = 7.5
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +1
Query: 331 IEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSR 510
+E L RR +++V +H+ +L HI+ RK V+ P +V D G H+ F +
Sbjct: 18 LEQNLTRRQRSEVLLGHFL--VHNLHLLHGILHIKRRKTFVHYPRPLV--DLGTHLKFLK 73
Query: 511 NLHSVEV 531
LHS V
Sbjct: 74 KLHSALV 80
>UniRef50_Q9F848 Cluster: CmlH; n=1; Streptomyces venezuelae|Rep:
CmlH - Streptomyces venezuelae
Length = 968
Score = 32.7 bits (71), Expect = 7.5
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -1
Query: 543 HVQDDLHR--MEISREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMMDG 391
H++DD +E +R V + R+ H DV LADT + PD N G DG
Sbjct: 797 HLKDDWFTALLETARRVGAMPRLSGHVPVCDV-GTLADTLLGRPDANPGTADG 848
>UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 157
Score = 32.3 bits (70), Expect = 9.9
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 349 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 474
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>UniRef50_A6SNP0 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 423
Score = 32.3 bits (70), Expect = 9.9
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 343 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSRNL 516
+ERRL T +F+A A S AR + ++V + ++ P +++ +D R L
Sbjct: 122 IERRLDTAIFRALFASSARQARQFVVHGKVKVNGKKMSYPGYLLNPGDMFQVDVERVL 179
>UniRef50_A0B7K6 Cluster: Thiamine biosynthesis protein; n=1;
Methanosaeta thermophila PT|Rep: Thiamine biosynthesis
protein - Methanosaeta thermophila (strain DSM 6194 /
PT) (Methanothrixthermophila (strain DSM 6194 / PT))
Length = 335
Score = 32.3 bits (70), Expect = 9.9
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +2
Query: 14 ELAKMVNNRVPSVFSKTY-VTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIR 190
ELA+ + S+ S+ P++P +ARL++ L+I GE GLR+ + RIR
Sbjct: 275 ELARRIGTYDISIGSQQCRAAPKKPVTRARLEEILRIEGELGLRDLAMELADGVEIVRIR 334
Query: 191 K 193
+
Sbjct: 335 R 335
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,031,087
Number of Sequences: 1657284
Number of extensions: 13021879
Number of successful extensions: 38410
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 37016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38400
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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