Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00291
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 128 7e-31
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 128 9e-31
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 30 0.32
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 29 0.42
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 29 0.55
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 29 0.73
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 27 3.0
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 3.0
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos... 26 3.9
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 25 6.8
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 9.0
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 128 bits (309), Expect = 7e-31
Identities = 59/73 (80%), Positives = 67/73 (91%)
Frame = +1
Query: 289 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 468
DE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+PSF
Sbjct: 87 DESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSF 146
Query: 469 IVRLDSGKHIDFS 507
+VRLD+ KHIDF+
Sbjct: 147 VVRLDAQKHIDFA 159
Score = 117 bits (282), Expect = 1e-27
Identities = 54/71 (76%), Positives = 60/71 (84%)
Frame = +2
Query: 44 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 223
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 224 KDPKRLFEGNA 256
KDPKRLFEGNA
Sbjct: 65 KDPKRLFEGNA 75
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = +3
Query: 513 SPFGGGRPGRVKRKNLRKGQGGG 581
SP+GGGRPGR KRK LR Q GG
Sbjct: 162 SPYGGGRPGRCKRKRLRSQQEGG 184
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 128 bits (308), Expect = 9e-31
Identities = 59/73 (80%), Positives = 67/73 (91%)
Frame = +1
Query: 289 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 468
DE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+PSF
Sbjct: 87 DETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSF 146
Query: 469 IVRLDSGKHIDFS 507
+VRLD+ KHIDF+
Sbjct: 147 VVRLDTQKHIDFA 159
Score = 117 bits (282), Expect = 1e-27
Identities = 54/71 (76%), Positives = 60/71 (84%)
Frame = +2
Query: 44 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 223
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 224 KDPKRLFEGNA 256
KDPKRLFEGNA
Sbjct: 65 KDPKRLFEGNA 75
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 513 SPFGGGRPGRVKRKNLRKGQGG 578
SP+GGGRPGR KRK LR +GG
Sbjct: 162 SPYGGGRPGRCKRKRLRSQEGG 183
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 29.9 bits (64), Expect = 0.32
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 349 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 474
RRL + K +++ + A LI Q H+RV V+ P+++V
Sbjct: 109 RRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLV 150
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 29.5 bits (63), Expect = 0.42
Identities = 18/73 (24%), Positives = 34/73 (46%)
Frame = +1
Query: 349 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSRNLHSVE 528
R L G+ ++I+ +++L + +RK N+P ++ LD+ + + F L E
Sbjct: 110 RGLDCWYLVVGVRRAINESQLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTELGQQE 169
Query: 529 VVLDVSRGRTSAR 567
+L G S R
Sbjct: 170 DLLSSRDGEASLR 182
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.1 bits (62), Expect = 0.55
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +3
Query: 330 D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHP 461
D GLLGA+S GVQS PG P P + P S P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 28.7 bits (61), Expect = 0.73
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 572 LSLAEVLPLDTS-RTTSTEWRFREKSMCLP 486
LS+AE+LP D S R +S+ F E S C P
Sbjct: 661 LSIAEILPADESLRYSSSSVPFYESSTCAP 690
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 440 ASKL*TSHHLLCAWTLASTLTSLEISIRWRSSWTCQEEE 556
A K+ SH+LL A ++T I W ++C++EE
Sbjct: 119 AYKITDSHYLLVAIIQSTTAIQAGILTAWYQLYSCKKEE 157
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 301 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 432
+++D L + +E FL++ TQ+ +A I + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175
>SPAC664.07c |rad9||checkpoint clamp complex protein
Rad9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 479 WTLASTLTSLEISIRWRSSWTCQEEEPPQGTGWRS 583
W +ST SL S+ +S T PP GW++
Sbjct: 316 WQHSSTPASLFNSVERNNSLTAVAHNPPGSIGWQT 350
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 487 GKHIDFSRNLHSVEVVLDVSRGRTSARDRVAE 582
GKH F+R ++VV + +G T DR E
Sbjct: 567 GKHTIFARAYAGLDVVHRIEQGETDKYDRPLE 598
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +2
Query: 17 LAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYT 175
++K VN FS + +R + A +D + + E RN++ +++YT
Sbjct: 470 ISKKVNCLYVEAFSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVKIEYT 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,792
Number of Sequences: 5004
Number of extensions: 51089
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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