Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00291
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             137   6e-33
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)                       28   7.2  
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)               28   7.2  
SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26)                 27   9.5  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  137 bits (332), Expect = 6e-33
 Identities = 64/75 (85%), Positives = 70/75 (93%)
 Frame = +1

Query: 289 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 468
           DE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRVRKQ+VN+PSF
Sbjct: 85  DESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQLVNVPSF 144

Query: 469 IVRLDSGKHIDFSRN 513
           +VRLDS KHIDFS N
Sbjct: 145 VVRLDSQKHIDFSLN 159



 Score =  131 bits (316), Expect = 5e-31
 Identities = 62/69 (89%), Positives = 65/69 (94%)
 Frame = +2

Query: 50  VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 229
           V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKD
Sbjct: 5   VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64

Query: 230 PKRLFEGNA 256
           P+RLFEGNA
Sbjct: 65  PRRLFEGNA 73



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 19/22 (86%), Positives = 22/22 (100%)
 Frame = +3

Query: 513 SPFGGGRPGRVKRKNLRKGQGG 578
           SP+GGGRPGRVKRKN++KGQGG
Sbjct: 160 SPYGGGRPGRVKRKNMKKGQGG 181


>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +2

Query: 77  RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 235
           +RP  K  L Q+   +G+YG   KR+   V         AARE+L +E   PK
Sbjct: 57  KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 109


>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 340 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 474
           F  RRL   +    +A+ +  A   I Q H+RV  +V+  P+F+V
Sbjct: 105 FCRRRLPVVMVNLKMAQVVKDAVKYIEQGHVRVGPEVIMDPAFLV 149


>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
          Length = 259

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 457 CSQLACGHEYAFAGSKFWHDGWTSP 383
           C++LA    Y++ G +FW + W+ P
Sbjct: 72  CARLAEQKNYSYFGVQFWGECWSGP 96


>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
          Length = 454

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 92  KARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 235
           K  L Q+   +G+YG   KR+   V         AARE+L +E   PK
Sbjct: 2   KELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 49


>SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26)
          Length = 600

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 459 DVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQEVLN 331
           D+  + A   MP P   +G+ D + Q +FE +++  T   VL+
Sbjct: 381 DLEKVKAICEMPQPVDIAGVQDLIAQEAFEKIKMMITKAPVLH 423


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,788,290
Number of Sequences: 59808
Number of extensions: 418861
Number of successful extensions: 1190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)