Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00291
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   134   5e-32
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    37   0.014
Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    29   2.7  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   3.6  
AC017117-4|AAF16610.1|  247|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rna...    28   4.8  
Z81113-4|CAB03281.2|  388|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF000198-9|AAB53057.4|  684|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  134 bits (324), Expect = 5e-32
 Identities = 63/73 (86%), Positives = 69/73 (94%)
 Frame = +1

Query: 289 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 468
           DE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSIHHARILI+Q HIRVR+QVV++PSF
Sbjct: 87  DETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSF 146

Query: 469 IVRLDSGKHIDFS 507
           IVRLDS KHIDFS
Sbjct: 147 IVRLDSQKHIDFS 159



 Score =  124 bits (298), Expect = 7e-29
 Identities = 57/73 (78%), Positives = 66/73 (90%)
 Frame = +2

Query: 38  RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 217
           R+ +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3   RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62

Query: 218 EEKDPKRLFEGNA 256
           E+KDPKRLFEGNA
Sbjct: 63  EDKDPKRLFEGNA 75



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = +3

Query: 510 KSPFGGGRPGRVKRKNLRKGQGGG 581
           +SP+GGGRPGRVKR+ LRKG G G
Sbjct: 161 QSPYGGGRPGRVKRRTLRKGDGAG 184


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = +1

Query: 340 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSRNLH 519
           F  RRL   +   G+ +S+  A  L+ Q H+R+  ++V  P+F+V   S   I +++   
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASK 164

Query: 520 SVEVVLDVSRGR 555
             + V+D +  R
Sbjct: 165 IKKHVMDYNNTR 176


>Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical
           protein F45D3.3 protein.
          Length = 236

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +3

Query: 294 KTDETRLCAWSE---D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPI 464
           KTDE    A S+   D    G +SA A V + P   + S  NFD  K  SC    C  PI
Sbjct: 107 KTDEIVESAESDSSSDTDYFGEASASAPVSN-PALTYLSGANFDNVKQPSCQMLGCTGPI 165


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 457 CSQLACGHEYAFAGSKFWHDG 395
           C +  CG E+ F   K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 460 GCSQLACGHEYAFAGSKFWH 401
           GC +L   +EY FA  K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358


>AC017117-4|AAF16610.1|  247|Caenorhabditis elegans Hypothetical
           protein F43C11.6 protein.
          Length = 247

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 629 IIYIYCLINLPLHHWRSATLSLAEVLPLDTSRTTSTEWRFREKSMCLPES 480
           II+I  ++ L  H W+  TLS  ++L     +  ST W++    + +P S
Sbjct: 84  IIFIEAILMLEEHKWKDDTLS-NQLLRWMFGKAESTHWKWHVNPVTVPFS 132


>AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rnai
           (rna interference)protein 1, isoform b protein.
          Length = 582

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
 Frame = +1

Query: 292 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 471
           EK    +Y+   + EDF +   +  +FK G  KS   AR +I    + V  +  +  +  
Sbjct: 427 EKMAIREYLENKQTEDFAKIAAERGIFKIGEIKSYQTARPIIEDDDVDVESEEEDYGTEF 486

Query: 472 VRLDSGKHI-DFSRNLHSVEVVLDVSRGRTSARDRVAE 582
             L+  + +   S  LH+ EV LD    R    D   E
Sbjct: 487 EMLEVVERMPPVSSTLHT-EVDLDAVWERDGGSDSERE 523


>Z81113-4|CAB03281.2|  388|Caenorhabditis elegans Hypothetical
           protein T03F6.4 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 515 RFREKSMCLPESRRTINDGMFTTCL 441
           RF+ +  C PES+R I D  F  CL
Sbjct: 153 RFQVRKQCKPESQR-IEDNFFADCL 176


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 72  VTYVFENTDGTLLFTILASSH 10
           + YVF+N+D  LLF IL   H
Sbjct: 160 LVYVFDNSDSDLLFQILTRVH 180


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = +1

Query: 328 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 453
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = +1

Query: 328 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 453
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341


>AF000198-9|AAB53057.4|  684|Caenorhabditis elegans Hypothetical
           protein T28F2.7 protein.
          Length = 684

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 22/99 (22%), Positives = 46/99 (46%)
 Frame = +2

Query: 2   SSACELAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLA 181
           SS+C     + N  PS    ++++  +PF K R  Q   +I +  + + R++   +   +
Sbjct: 21  SSSCSTVGDMPNIKPSASKGSFLSELKPFSK-RASQ---LIVDVPVAHLRKIKNTEGVSS 76

Query: 182 RIRKAARELLTLEEKDPKRLFEGNAFYVVWFVLEYWMKN 298
             R++     T     PKR++ G  +  V++V   W+ +
Sbjct: 77  ITRESEHFSNTTTLHGPKRIYNGKGWSCVFWVF-IWISS 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,279,315
Number of Sequences: 27780
Number of extensions: 303100
Number of successful extensions: 883
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)