Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00291
(630 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri... 122 2e-28
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri... 120 1e-27
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei... 32 0.27
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 29 3.4
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 28 4.4
At5g41310.1 68418.m05020 kinesin motor protein-related 28 4.4
At1g43730.1 68414.m05028 hypothetical protein 28 4.4
At5g28615.1 68418.m03493 hypothetical protein 27 7.8
At4g03030.1 68417.m00411 kelch repeat-containing F-box family pr... 27 7.8
At3g44820.1 68416.m04829 phototropic-responsive NPH3 family prot... 27 7.8
At1g58390.1 68414.m06643 disease resistance protein (CC-NBS-LRR ... 27 7.8
>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
Length = 198
Score = 122 bits (294), Expect = 2e-28
Identities = 57/73 (78%), Positives = 66/73 (90%)
Frame = +1
Query: 289 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 468
DE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH+R+LIRQRHIRV KQ+VNIPSF
Sbjct: 89 DESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSF 148
Query: 469 IVRLDSGKHIDFS 507
+VRLDS KHIDF+
Sbjct: 149 MVRLDSQKHIDFA 161
Score = 111 bits (266), Expect = 5e-25
Identities = 47/68 (69%), Positives = 60/68 (88%)
Frame = +2
Query: 53 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 232
+ KT+ PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10 YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69
Query: 233 KRLFEGNA 256
+R+FEG A
Sbjct: 70 RRIFEGEA 77
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/27 (66%), Positives = 20/27 (74%), Gaps = 4/27 (14%)
Frame = +3
Query: 513 SPFGGGRPGRVKRKN----LRKGQGGG 581
SPFGGGRPGRVKR+N +K GGG
Sbjct: 164 SPFGGGRPGRVKRRNEKSASKKASGGG 190
>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
Length = 197
Score = 120 bits (288), Expect = 1e-27
Identities = 55/73 (75%), Positives = 66/73 (90%)
Frame = +1
Query: 289 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 468
DE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHHAR+LIRQRHIRV +Q+VNIPSF
Sbjct: 89 DETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSF 148
Query: 469 IVRLDSGKHIDFS 507
+VR++S KH+DFS
Sbjct: 149 MVRVESQKHVDFS 161
Score = 114 bits (274), Expect = 5e-26
Identities = 52/77 (67%), Positives = 64/77 (83%)
Frame = +2
Query: 26 MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 205
MVN R + KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARE
Sbjct: 1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60
Query: 206 LLTLEEKDPKRLFEGNA 256
LLTL+EK+P+R+FEG A
Sbjct: 61 LLTLDEKNPRRIFEGEA 77
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3
Query: 513 SPFGGGRPGRVKRKNLRKG 569
SPFGGGRPGRVKR+N R G
Sbjct: 164 SPFGGGRPGRVKRRNERAG 182
>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
40S RIBOSOMAL PROTEINs - different species
Length = 182
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 325 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 474
L + F RRL T + A+ A I Q H+RV + + P+F+V
Sbjct: 99 LSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPETITDPAFLV 148
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 59 KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 175
K ++ PRR P + Q E K EYG RN E W + T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 297 TDETRLCAWSED*GLLGASSADAGVQSW 380
T E CAWS LL + S DA + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292
>At5g41310.1 68418.m05020 kinesin motor protein-related
Length = 961
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 359 RRRCSKLAWRSPSIMPEF*SGKGIFVSASKL*TSHHLL 472
RRR S A S + F G F+ AS++ TSHH L
Sbjct: 141 RRRWSLPADHSKGVDSNFNDGGSQFIEASEINTSHHSL 178
>At1g43730.1 68414.m05028 hypothetical protein
Length = 320
Score = 28.3 bits (60), Expect = 4.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 415 SKFWHDGWTSPGQL 374
+KFWHD WT G L
Sbjct: 77 AKFWHDNWTGHGPL 90
>At5g28615.1 68418.m03493 hypothetical protein
Length = 149
Score = 27.5 bits (58), Expect = 7.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 415 SKFWHDGWTSPGQL 374
+KFWHD WT G L
Sbjct: 9 AKFWHDDWTGLGPL 22
>At4g03030.1 68417.m00411 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 442
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 146 KREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAFYVV 268
+++ WRV L R R L EK+ ++ EG F+V+
Sbjct: 233 EKDEWRVMNELPRFRAGCVGFLVENEKEKEKEEEGREFWVM 273
>At3g44820.1 68416.m04829 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 661
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 614 CLINLPLHHWRSATLSLAEVLPLDTSRTTSTEWRFREKSMCLPESRRTINDGMF 453
C+ + H WR +AEV S + R + LPES R + DG++
Sbjct: 411 CVERIVRHFWRLVDSYMAEV----ASDVNLKPDKMRSLAAALPESSRPLYDGLY 460
>At1g58390.1 68414.m06643 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 907
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 608 INLPLHHWRSATLSLAEVLPLDTSRTTSTEWRFREKSMC 492
+ LPLH + LSL ++ L+T ST W K +C
Sbjct: 661 LKLPLHMHKKTRLSLRNLVKLETLVYFST-WHSSSKDLC 698
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,578,107
Number of Sequences: 28952
Number of extensions: 287332
Number of successful extensions: 864
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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