Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00290
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    28   1.6  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    27   2.8  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    27   2.8  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   4.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   8.5  

>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 618 FRKYNTNTSDTHAISISNSYKLKRVFV*HQLY 523
           F   NT+TSD H + ++ +  L R+ + H +Y
Sbjct: 377 FGDVNTHTSDMHIVRVNQTIDLGRLKLVHDIY 408


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -2

Query: 686 NVHISLRSQNILVMI--VQSELFGYLENIIQTLQTPMRF 576
           N HI+L +   L  +  +QS+ +GY+E + +T  TP+ F
Sbjct: 77  NPHITLCTFLALESLKGIQSKWYGYIEYLPKTFNTPLYF 115


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 610 FSKYPNSSLCTIITRIFCDLKEM*TFRISLSISFEHMNREC 732
           +  YPN  L ++I +   DL++  TF   L  +F+ +  EC
Sbjct: 570 YGHYPNWDLVSVIVKTGADLRQE-TFACQLIYAFQRVWLEC 609


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 422  NNILNSILDFMASNPESFI 478
            NN+L +ILD M S P +F+
Sbjct: 989  NNLLITILDLMKSEPSTFV 1007


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/41 (26%), Positives = 26/41 (63%)
 Frame = -2

Query: 710 NDIERDIRNVHISLRSQNILVMIVQSELFGYLENIIQTLQT 588
           +++  ++R+ H++++SQN  ++  +S+L    EN+ Q   T
Sbjct: 793 SNLYHELRDDHVNMQSQNNTLLESESKLKTDCENLTQQNMT 833


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,456
Number of Sequences: 5004
Number of extensions: 52486
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)