Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00290
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81553-7|CAB04496.4|  797|Caenorhabditis elegans Hypothetical pr...    36   0.039
Z81553-12|CAB04498.3|  803|Caenorhabditis elegans Hypothetical p...    31   0.64 
U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical ...    29   2.6  
AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF497830-1|AAM18108.1|  533|Caenorhabditis elegans putative Na-H...    29   4.5  
AF098995-2|AAC67478.2|  538|Caenorhabditis elegans Na/h exchange...    29   4.5  
AF098995-1|AAR30204.1|  634|Caenorhabditis elegans Na/h exchange...    29   4.5  
AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical...    28   6.0  
Z81492-9|CAB04026.2|  805|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U80030-8|AAG24166.2|  375|Caenorhabditis elegans Serpentine rece...    28   7.9  

>Z81553-7|CAB04496.4|  797|Caenorhabditis elegans Hypothetical
           protein F56H6.7 protein.
          Length = 797

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 25/72 (34%), Positives = 36/72 (50%)
 Frame = -1

Query: 618 FRKYNTNTSDTHAISISNSYKLKRVFV*HQLYHNQATWPTCFKLIHRIKDSGLEAIKSNI 439
           F K+ TN +DT  +     YK+KR  V   L H+       ++L++  K+SGL     N+
Sbjct: 205 FEKH-TNGNDTQVLC----YKMKRAAVQQGLVHHDPDVDAIYRLLNADKNSGL-----NV 254

Query: 438 EFKMLLAPITFS 403
           EF     PIT S
Sbjct: 255 EFNKFAPPITLS 266


>Z81553-12|CAB04498.3|  803|Caenorhabditis elegans Hypothetical
           protein F56H6.9 protein.
          Length = 803

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -1

Query: 561 YKLKRVFV*HQLYHNQATWPTCFKLIHRIKDSGLEAIKSNIEFKMLLAPITFS 403
           YK+KR  V   L H+       ++L++  K++GL     N+EF     PIT S
Sbjct: 219 YKMKRAAVQQGLVHHDPDVDAIYRLLNADKNNGL-----NVEFNKFAPPITLS 266


>U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical
           protein F02C9.2 protein.
          Length = 806

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = -1

Query: 606 NTNTSDTHAISISNSYKLKRVFV*HQLYHNQATWPTCFKLIHRIKDSGLEAIKSNIEFKM 427
           +TN ++T  +     YK+KR  V   L H+       ++L H    SGL     N++F  
Sbjct: 211 HTNGNETQVLC----YKMKRAAVQQGLVHHDPDVDAIYRLQHADSRSGL-----NVKFNK 261

Query: 426 LLAPITFS 403
              PIT S
Sbjct: 262 FAPPITLS 269


>AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical
           protein Y45G12C.11 protein.
          Length = 779

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -1

Query: 561 YKLKRVFV*HQLYHNQATWPTCFKLIHRIKDSGLEAIKSNIEFKMLLAPITFSKSPEYNF 382
           YK+KR  V   L H+       ++L+H    +GL+   +     + L+  T+S     N 
Sbjct: 199 YKMKRAAVQQGLVHHDPDVDAIYRLLHADSSNGLDISFNKFAPPITLSVGTYSPWNSQNT 258

Query: 381 KLHKT 367
             HK+
Sbjct: 259 MFHKS 263


>AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical
           protein F56A4.6 protein.
          Length = 796

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -1

Query: 561 YKLKRVFV*HQLYHNQATWPTCFKLIHRIKDSGLEAIKSNIEFKMLLAPITFSKSPEYNF 382
           YK+KR  V   L H+       ++L+H    +GL+   +     + L+  T+S     N 
Sbjct: 216 YKMKRAAVQQGLVHHDPDVDAIYRLLHADSSNGLDISFNKFAPPITLSVGTYSPWNSQNT 275

Query: 381 KLHKT 367
             HK+
Sbjct: 276 MFHKS 280


>AF497830-1|AAM18108.1|  533|Caenorhabditis elegans putative Na-H
           exchanger isoform 6 protein.
          Length = 533

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 60  FETCFLINILIFSEAMKIVRLVIACVFVRS--SNRYTKI 170
           ++TCF++  ++F    + + +V+ C F+     N+YTK+
Sbjct: 362 WDTCFIVLTVVFCLIYRTLGVVVMCHFLNKYRLNKYTKV 400


>AF098995-2|AAC67478.2|  538|Caenorhabditis elegans Na/h exchanger
           protein 6, isoform a protein.
          Length = 538

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 60  FETCFLINILIFSEAMKIVRLVIACVFVRS--SNRYTKI 170
           ++TCF++  ++F    + + +V+ C F+     N+YTK+
Sbjct: 362 WDTCFIVLTVVFCLIYRTLGVVVMCHFLNKYRLNKYTKV 400


>AF098995-1|AAR30204.1|  634|Caenorhabditis elegans Na/h exchanger
           protein 6, isoform b protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 60  FETCFLINILIFSEAMKIVRLVIACVFVRS--SNRYTKI 170
           ++TCF++  ++F    + + +V+ C F+     N+YTK+
Sbjct: 362 WDTCFIVLTVVFCLIYRTLGVVVMCHFLNKYRLNKYTKV 400


>AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical
           protein F46F5.11 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 561 YKLKRVFV*HQLYHNQATWPTCFKLIHRIKDSGLEAIKSNIEFKMLLAPITFS 403
           Y++KR  V   L H+       ++L+H    +GL     N++F     PIT S
Sbjct: 208 YEMKRAAVQQGLVHHDPDVDAIYRLLHADSKNGL-----NLQFNKFAPPITLS 255


>Z81492-9|CAB04026.2|  805|Caenorhabditis elegans Hypothetical
           protein E03H4.4 protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 561 YKLKRVFV*HQLYHNQATWPTCFKLIHRIKDSGLEAIKSNIEFKMLLAPITFS 403
           YK++R  V   L  +       ++L++  K+SGL     N+EF     PIT S
Sbjct: 223 YKMERAAVQQGLVQHDPDVDAIYRLLNADKNSGL-----NVEFNKFAPPITLS 270


>U80030-8|AAG24166.2|  375|Caenorhabditis elegans Serpentine
           receptor, class w protein112 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -3

Query: 205 FQNCSYIFCDNEILVYRL---LERTNTHAITSLTIFIASLNINILIRKHVSN 59
           ++  S +F DNE+L+Y +   LE   +  I  L   IA++ + I IRK   N
Sbjct: 204 YRGLSDLFMDNEMLIYNIFFYLEGVTSKLIPCLLYPIATVFLIIEIRKAAIN 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,007,946
Number of Sequences: 27780
Number of extensions: 284459
Number of successful extensions: 608
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)