Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00290
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.0  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   6.9  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   6.9  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = -1

Query: 711 ERYRKGYPKCSHLFKIAEYSSDDRTKRTVRIFRKYNTNTSDTHA 580
           ++Y  G   C H F   +Y   D    T  I  +  T   +TH+
Sbjct: 597 KKYVAGEQCCWHCFNCTQYQIRDHKDVTQCISCRQGTVPDETHS 640


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 504 ATSPGCDRVGVKQKH 548
           A S GC++   KQKH
Sbjct: 67  ALSTGCNKCNEKQKH 81


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 504 ATSPGCDRVGVKQKH 548
           A S GC++   KQKH
Sbjct: 67  ALSTGCNKCNEKQKH 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,874
Number of Sequences: 438
Number of extensions: 3781
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)