Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00289
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 128 9e-31
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 128 9e-31
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 29 0.56
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 29 0.56
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.74
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 3.0
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 5.2
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 5.2
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 9.1
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 9.1
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 25 9.1
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 128 bits (308), Expect = 9e-31
Identities = 55/82 (67%), Positives = 72/82 (87%)
Frame = +3
Query: 12 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 191
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60
Query: 192 ARVRKNTEARRKGRHCGFGKRE 257
R+RK A+R GRH G+GKR+
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRK 82
Score = 87.0 bits (206), Expect = 2e-18
Identities = 39/86 (45%), Positives = 55/86 (63%)
Frame = +2
Query: 254 RGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 433
+GTA ARMP +W + KID+HLYH+LY++AKGN FK+KR L+E+
Sbjct: 82 KGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEH 141
Query: 434 IHRKKAEKARTKMLSDQAEARRNKVR 511
I R KAE RTK++ +Q +ARR + +
Sbjct: 142 IQRAKAEANRTKLIQEQQDARRARAK 167
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 128 bits (308), Expect = 9e-31
Identities = 55/82 (67%), Positives = 72/82 (87%)
Frame = +3
Query: 12 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 191
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60
Query: 192 ARVRKNTEARRKGRHCGFGKRE 257
R+RK A+R GRH G+GKR+
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRK 82
Score = 87.0 bits (206), Expect = 2e-18
Identities = 39/86 (45%), Positives = 55/86 (63%)
Frame = +2
Query: 254 RGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 433
+GTA ARMP +W + KID+HLYH+LY++AKGN FK+KR L+E+
Sbjct: 82 KGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEH 141
Query: 434 IHRKKAEKARTKMLSDQAEARRNKVR 511
I R KAE RTK++ +Q +ARR + +
Sbjct: 142 IQRAKAEANRTKLIQEQQDARRARAK 167
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 29.1 bits (62), Expect = 0.56
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 428 EYIHRKKAEKARTKMLSDQAEARRNKVRRHASAARNVLPPRRRN 559
E I R + T+M Q +ARR +VRR + R + +RRN
Sbjct: 510 ETITRSGIAISSTEMDHQQKQARRRRVRRKHAEKRKQMAEKRRN 553
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 29.1 bits (62), Expect = 0.56
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -2
Query: 155 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 66
+I +H++DV G+ V LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 28.7 bits (61), Expect = 0.74
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 134 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 39
+VLS + ++D + PHLL +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 3.0
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +2
Query: 395 GNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVRRHASAARNVLPPRRRNCCRPS 574
G + K + V +E H+ + A T EA + +S A+N L +R+ +
Sbjct: 1414 GFLDKLRNVKLESHHKPRNRSAITMGKEHLIEAPNTSTK--SSPAKNELFVPKRSSVKSD 1471
Query: 575 LEKTKPRLPLRSK 613
L K +PR P S+
Sbjct: 1472 LAKVRPRYPKGSE 1484
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.8 bits (54), Expect = 5.2
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +2
Query: 344 AKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIH--RKKAEKARTKMLSDQAEARRNKVRRH 517
++ + L++ ++ K + K L+E + +KK KAR+ M D+ +R+ +RR
Sbjct: 876 SRLLSNPLHNFSELEEKYAEYLRKLALLEEVKDLKKKLSKARSIMQLDELNSRKRVLRRL 935
Query: 518 A-SAARNVLPPRRRNCCRPS 574
+ + +V+ + R C S
Sbjct: 936 GFTTSDDVIEVKGRVACEIS 955
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 450 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 358
AF LW+YS+ L+L + W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Frame = +3
Query: 72 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 218
K WLDP ++++ T + +++++ I ++K+ P + A KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348
Query: 219 RRKGR 233
R+ R
Sbjct: 349 RKSLR 353
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 126 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 242
+++R +KD + +PV+V S A ++T G G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 15 SSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 140
S + + K L S MRCG+K W++ + + NT+ + K
Sbjct: 317 SYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,091
Number of Sequences: 5004
Number of extensions: 50424
Number of successful extensions: 163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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