Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00289
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 130 9e-31
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 129 2e-30
07_03_1639 + 28305801-28305958,28306240-28306249 37 0.012
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 33 0.14
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 33 0.14
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 30 1.3
02_01_0360 - 2594534-2594601,2594778-2594829,2594915-2595029,259... 30 1.3
04_04_1503 + 34031540-34031562,34031682-34032212,34032417-340325... 29 2.3
03_02_0050 + 5272471-5274861 29 4.1
04_03_0266 + 13648287-13649099,13649186-13649524 28 5.4
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 28 7.1
09_06_0281 + 22014394-22015534,22016041-22017056 28 7.1
04_03_0227 + 12979635-12980363,12980439-12980474,12980604-129808... 28 7.1
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 28 7.1
12_01_0476 + 3738526-3738567,3738695-3738739,3739240-3739601,373... 27 9.4
10_08_0781 + 20509033-20509714,20510048-20510191,20510604-205107... 27 9.4
08_02_1558 + 27870327-27870332,27870890-27871163,27871438-278715... 27 9.4
02_05_0067 + 25557975-25558553 27 9.4
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 27 9.4
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 130 bits (314), Expect = 9e-31
Identities = 57/81 (70%), Positives = 70/81 (86%)
Frame = +3
Query: 12 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 191
M SLKLQKRLAASV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 192 ARVRKNTEARRKGRHCGFGKR 254
+R R+ EA++KGRH G+GKR
Sbjct: 61 SRARRAHEAKQKGRHSGYGKR 81
Score = 103 bits (248), Expect = 9e-23
Identities = 55/110 (50%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Frame = +2
Query: 209 HRST*KGSSLWLW*ERGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMK 388
H + KG RGT AR+P K LW AKKID+H+YH +YMK
Sbjct: 67 HEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMK 126
Query: 389 AKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARR--NKVRRHASAAR 532
KGN+FKNKRVLME IH+ KAEKAR K LSDQ EA+R +K R AR
Sbjct: 127 VKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKSKASRERKIAR 176
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 129 bits (311), Expect = 2e-30
Identities = 56/81 (69%), Positives = 70/81 (86%)
Frame = +3
Query: 12 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 191
M SLKLQKRLA+SV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 192 ARVRKNTEARRKGRHCGFGKR 254
+R R+ EA++KGRH G+GKR
Sbjct: 61 SRARRAHEAKQKGRHSGYGKR 81
Score = 105 bits (251), Expect = 4e-23
Identities = 60/134 (44%), Positives = 73/134 (54%)
Frame = +2
Query: 209 HRST*KGSSLWLW*ERGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMK 388
H + KG RGT AR+P K LW AKKID+H+YH +YMK
Sbjct: 67 HEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMK 126
Query: 389 AKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVRRHASAARNVLPPRRRNCCR 568
KGN+FKNKRVLME IH+ KAEKAR K LSDQ EA+R K + AS R + R
Sbjct: 127 VKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKSK--ASRERKIARRDERLAQG 184
Query: 569 PSLEKTKPRLPLRS 610
P E P +P ++
Sbjct: 185 PR-EPAAPAVPAQT 197
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +2
Query: 383 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNK 505
MK KGN+ NKR + +AEKAR + LSDQ EA+ K
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQFEAKLAK 41
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 33.5 bits (73), Expect = 0.14
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +3
Query: 27 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 197
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 748 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 805
Query: 198 VRKNTEARRKGRHCGFG 248
+ T RKGR GFG
Sbjct: 806 DEETTSISRKGRAQGFG 822
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 33.5 bits (73), Expect = 0.14
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +3
Query: 27 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 197
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 699 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 756
Query: 198 VRKNTEARRKGRHCGFG 248
+ T RKGR GFG
Sbjct: 757 DEETTSISRKGRAQGFG 773
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 440 RKKAEKARTKMLSDQAEARRNKVRRHASA 526
RKKAE+A K +++AEARR K A
Sbjct: 208 RKKAEEAEAKRKAEEAEARRKKEEEERDA 236
>02_01_0360 -
2594534-2594601,2594778-2594829,2594915-2595029,
2595124-2595212,2595326-2595391,2595468-2595657,
2595811-2596037,2596111-2596185,2596283-2596354,
2596507-2596577,2596848-2597036,2597186-2597298,
2598063-2598268
Length = 510
Score = 30.3 bits (65), Expect = 1.3
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Frame = -1
Query: 483 WSLSIFVLAFSAFFLWMYSMSTRLFLNTLPFAFM*SEWYRCLSIFLAVLYFRSNFLKTLC 304
W++S+ L+ AFF+W S N A S++ L I + Y LKT
Sbjct: 116 WAVSVSCLSMLAFFVWHLRQSPS---NGNSIA---SKYGLLLIILYPLAYLFHLLLKTDG 169
Query: 303 LCTHSSFCGIRALA-VPLSYQSHSDDPFY---VLLCFCG 199
C F I +A P S+ + PF+ VL +CG
Sbjct: 170 DCICLDFRAIHTIASYPTSFHAGMGRPFWSQVVLFLYCG 208
>04_04_1503 +
34031540-34031562,34031682-34032212,34032417-34032571,
34032929-34033020,34033916-34034419
Length = 434
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 443 KKAEKAR--TKMLSDQAEARRNKVRRHASAARNVL-PPRRRNCCRPSLEKTKPRLPLRSK 613
+K K R T + D+ +ARR+K R + PPRR + + PR+PL +
Sbjct: 295 RKGNKQRMSTALDCDRTDARRSKTRGRNDRWMTIRGPPRRATRRQKNQLLNSPRVPLMGR 354
Query: 614 H 616
H
Sbjct: 355 H 355
>03_02_0050 + 5272471-5274861
Length = 796
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -3
Query: 550 SWRQYVPRGACVPPHFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 398
++R+++ +C+P + L +HL P LLS +P+D L H H +L H+
Sbjct: 82 AYRRHLSPPSCLPS-LVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132
>04_03_0266 + 13648287-13649099,13649186-13649524
Length = 383
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 66 KKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNT 212
K+K+ L +E ++ T R+ RK+ K + KK + H ++RK++
Sbjct: 320 KRKLVLSDDEGDDAEKTRDRETTRKLPKQA-IPKKKTSSHPMPKIRKSS 367
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 81 LDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVH 185
LDP +NE N R NI IKD L ++ +H
Sbjct: 628 LDPAVVNETTLKNDRANIVDYIKDCLFARQRQGLH 662
>09_06_0281 + 22014394-22015534,22016041-22017056
Length = 718
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 182 YCYRFLDDETILDHLTDVLSGVGVCDLID 96
Y YR DDE+++ H T +L+ + D++D
Sbjct: 657 YSYRSPDDESLVTHFTALLTQGNLGDILD 685
>04_03_0227 +
12979635-12980363,12980439-12980474,12980604-12980873,
12980962-12981099,12981347-12981795,12981885-12982055,
12982136-12982370
Length = 675
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = +3
Query: 3 RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK 170
RVR L K V R LDP +NE N R N+ IKD L ++
Sbjct: 531 RVRAIDTNLLKLTWKHVHRKAPHVALLDPAVVNETTLKNDRANMMGYIKDCLFARQ 586
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +3
Query: 12 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 191
+ SL L R+ C +V+ D + N +NIRK + ++++ P+A +
Sbjct: 103 IESLSLMIRMLL-YCECFAARVYCDGCHCSPCGNKIENENIRKEAIETILLRNPLAFQPK 161
Query: 192 ARVRKNTEARRK 227
NT RK
Sbjct: 162 IENSPNTVTVRK 173
>12_01_0476 +
3738526-3738567,3738695-3738739,3739240-3739601,
3739691-3740057,3740490-3740555,3741630-3741743
Length = 331
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 36 RLAASVMRCGKKKVWLDPNEINEIA--NTNSRQNIRKMIKDGLV 161
R A RC + LDPNEI ++ SR+ + +++ G++
Sbjct: 236 RFALHCRRCERDATPLDPNEIKHVSPYGITSREQVLEVVARGIL 279
>10_08_0781 +
20509033-20509714,20510048-20510191,20510604-20510719,
20511356-20511520,20511822-20512043,20512613-20512735
Length = 483
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3
Query: 78 WLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGK 251
++D N+ + + +SR ++ ++ GL +K PV + VR E GR G G+
Sbjct: 29 YVDGNDTEDCYSGSSRASLAGALRQGLNLKSPVLGYKTPNVR---ELYTLGRELGQGQ 83
>08_02_1558 +
27870327-27870332,27870890-27871163,27871438-27871515,
27871753-27871917,27872353-27872603
Length = 257
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 511 PHFIAAGLSLVAKHLRPGLLSL 446
PH A+ L L+ KHL+PG+ +L
Sbjct: 68 PHMHASCLELLEKHLQPGMRAL 89
>02_05_0067 + 25557975-25558553
Length = 192
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 419 HACS*THYPSPSCRVSGIDACQSSW 345
H C H P CR + +DA Q+ W
Sbjct: 148 HGCDKEHAYQPPCRPNVVDASQAVW 172
>02_03_0300 +
17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 66 KKKVWLDPN-EINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRK 227
K KVW P E+ + +R + +K + +KP A R RVRK TEA K
Sbjct: 681 KPKVWSRPRKEVEPVGKPKARGHPKKQAEPD---EKPKA---RGRVRKTTEANGK 729
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,380,447
Number of Sequences: 37544
Number of extensions: 361809
Number of successful extensions: 1073
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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