Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00289
(636 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.) 139 2e-33
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09) 31 1.0
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_49306| Best HMM Match : Herpes_US9 (HMM E-Value=5.7) 28 5.5
SB_38054| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_37376| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_48272| Best HMM Match : HCO3_cotransp (HMM E-Value=0.0065) 27 9.7
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15) 27 9.7
>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 139 bits (336), Expect = 2e-33
Identities = 62/85 (72%), Positives = 74/85 (87%)
Frame = +3
Query: 3 RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 182
+V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP V
Sbjct: 26 KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85
Query: 183 HSRARVRKNTEARRKGRHCGFGKRE 257
HSRARVRK EAR KGRH G GKR+
Sbjct: 86 HSRARVRKADEARSKGRHSGHGKRK 110
Score = 127 bits (306), Expect = 9e-30
Identities = 59/84 (70%), Positives = 66/84 (78%)
Frame = +2
Query: 254 RGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 433
+GTANARMPQK +W AKKID H+YHSLYMK+KGNVFKNKRVLMEY
Sbjct: 110 KGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLYMKSKGNVFKNKRVLMEY 169
Query: 434 IHRKKAEKARTKMLSDQAEARRNK 505
IH+KKAEKAR+K+LSDQAEARRNK
Sbjct: 170 IHKKKAEKARSKLLSDQAEARRNK 193
>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
Length = 787
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 494 RRNKVRRHASAARNV-LPPRRRNCCRPSLEKTKPRLPLRSK 613
R N V AS +R PP +N +P ++KTKP PL ++
Sbjct: 182 RNNIVLSTASWSRKTSAPPSEKNAFQPPMKKTKPSSPLLTR 222
>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1270
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 455 KARTKMLSDQAEARRNKVRRHASAARNVLPPRR---RNCCRPSLEKTKPRLPLRSKHYVV 625
KA L D+ EA RN++R A+RN L R RN R E ++ R LR +H
Sbjct: 949 KALCNRLRDRHEASRNRLRDRHEASRNRLRDRHEASRNRLRNRHEASRNR--LRDRHEAS 1006
Query: 626 NNK 634
N+
Sbjct: 1007 RNR 1009
>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/74 (21%), Positives = 30/74 (40%)
Frame = +2
Query: 350 KIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVRRHASAA 529
+ R Y +LY KGN F + L++ E+ R K + ++R+ +
Sbjct: 70 EFQRKRYGNLYQLLKGNTFTDAEDLVKLWDAAHYEEERAKKRKPLTPLAKFRIRQRFTPP 129
Query: 530 RNVLPPRRRNCCRP 571
+ + P R+ P
Sbjct: 130 KTICPKGRQKSTLP 143
>SB_49306| Best HMM Match : Herpes_US9 (HMM E-Value=5.7)
Length = 381
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = -1
Query: 318 LKTLCLCTHSSFCGIRALAVPLSYQSHSDDPFYVL---LCFCGHE--RGSVLLQ 172
L+ LC C HS+ G L L Y HS +L LC+ GH G++LL+
Sbjct: 91 LRALCYCGHSAIVG-TLLLWALCYYGHSAITGTLLLRALCYYGHSAITGTLLLR 143
>SB_38054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 272 AHWLYLSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDE 156
A + L + K VT +TC FA AG ++FL D+
Sbjct: 37 AQAILLEIVKRKVTRKATCARCFAGPRAGDVSFKFLPDQ 75
>SB_37376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 348 LAVLYFRSNFLKTLCLCTHSSFCGIRALAVPLSYQSHSDDPF 223
LA+ FR F + C+ +S C I A+ + + HSD+ +
Sbjct: 190 LAISAFRDQFKEMSCINKLTSVCVIALTALTTTRKRHSDNEY 231
>SB_48272| Best HMM Match : HCO3_cotransp (HMM E-Value=0.0065)
Length = 202
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -1
Query: 345 AVLYFRSNFLKTLCLCTHSSFCGIRALAVPLSYQSHSDDPFYVLLCFCGHERGSVLLQVS 166
AV + C+ S CGI +A + + F +C+C E G++ L +S
Sbjct: 91 AVTSIKQELTNPYCIGVPYSSCGICGVAGSGNVSTSQCSAFGENMCYCSREAGTLYLLLS 150
>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
Length = 430
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 117 NSRQNIRKMIKDGLVIKK--PVAVHSRARVRKNTEARRKGRHCG-FGKREVQPMR 272
+S NIRK IKDG K P S +VRK + RR + K E +P++
Sbjct: 95 SSNTNIRKRIKDGDASKSNVPQRTTSHDQVRKVSGQRRHSTYTSQVKKHEQKPVK 149
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,752,647
Number of Sequences: 59808
Number of extensions: 407725
Number of successful extensions: 1343
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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