Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00289
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   126   2e-29
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    38   0.008
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.52 
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    31   0.69 
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    31   0.69 
AF022967-1|AAY86215.1|  370|Caenorhabditis elegans Hypothetical ...    31   0.69 
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un...    29   2.1  
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un...    29   2.1  
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.        29   2.1  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z83116-8|CAB05567.1|  397|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    27   8.5  
U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical ...    27   8.5  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  126 bits (303), Expect = 2e-29
 Identities = 53/81 (65%), Positives = 71/81 (87%)
 Frame = +3

Query: 12  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 191
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 192 ARVRKNTEARRKGRHCGFGKR 254
            R R+  EARRKGRH G+GKR
Sbjct: 61  FRAREYEEARRKGRHTGYGKR 81



 Score =  102 bits (245), Expect = 2e-22
 Identities = 47/84 (55%), Positives = 58/84 (69%)
 Frame = +2

Query: 254 RGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 433
           RGTANARMP+K LW                AKK+D+HLYH LY++AKGN FKNK+ L+EY
Sbjct: 82  RGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEY 141

Query: 434 IHRKKAEKARTKMLSDQAEARRNK 505
           I +KK E  R K L+DQA+ARR+K
Sbjct: 142 IFKKKTENKRAKQLADQAQARRDK 165


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = -2

Query: 323 IFLKPFVFVPIVPSVAYAHWLYLSLTKATVTT-LSTCFCVFADTSAGVYCYRFLDDETIL 147
           IF++PF    IV    +  W    L  A +   ++T FC+FAD S   +  R  DD+  +
Sbjct: 402 IFIEPFFVNMIVTDDTFTDWRNCFLAHAGLLLFVNTIFCLFADASPAKWT-RLQDDDVAI 460

Query: 146 DHLTDVLSGVGVCDLIDFI 90
           +   +  SG  + D+I F+
Sbjct: 461 EEEKEEYSG-SIEDIIKFL 478


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 108  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 242
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 556 PPSWRQYVPRGACVPPHFIAAGLSL 482
           P SW QY P+G C+ P  + A  S+
Sbjct: 221 PNSWHQYQPKGTCIQPVTLPASWSI 245


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 509 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 613
           RRHAS     +PP   NC +P+ ++T+  + L ++
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRTRGHVSLATR 48


>AF022967-1|AAY86215.1|  370|Caenorhabditis elegans Hypothetical
           protein C13A2.12 protein.
          Length = 370

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +2

Query: 371 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVRRHASAARN 535
           H     A+ N  K + V++   H+KKA      +    A ARRN ++R A AA N
Sbjct: 312 HKKKALARLNALKRQHVVVA--HKKKALARLNALKRKHAVARRNAIQRQARAAAN 364


>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 2, isoform a protein.
          Length = 1837

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 380  YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVRRHASAAR 532
            Y++    V   +  +  Y+ R+K E+ R  ++  QA  + N+VRR+    R
Sbjct: 852  YLQMHRAVIVMQSAVRGYLERRKYEQIRDSIIGIQAMFKANRVRRYVEKLR 902


>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 2, isoform b protein.
          Length = 1839

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 380  YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVRRHASAAR 532
            Y++    V   +  +  Y+ R+K E+ R  ++  QA  + N+VRR+    R
Sbjct: 852  YLQMHRAVIVMQSAVRGYLERRKYEQIRDSIIGIQAMFKANRVRRYVEKLR 902


>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
          Length = 1839

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 380  YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVRRHASAAR 532
            Y++    V   +  +  Y+ R+K E+ R  ++  QA  + N+VRR+    R
Sbjct: 852  YLQMHRAVIVMQSAVRGYLERRKYEQIRDSIIGIQAMFKANRVRRYVEKLR 902


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 120 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 233
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>Z83116-8|CAB05567.1|  397|Caenorhabditis elegans Hypothetical
           protein M01B2.10 protein.
          Length = 397

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 353 SSWQFCTSGAIFLKPFV--FVPIVPSVAYAHWLYLS 252
           +S+++C    I L PF   F+ +VP+     WLY +
Sbjct: 309 TSYKYCNEKLIKLDPFSNPFIKLVPTAIPGQWLYFN 344


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 63   GKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKG-RHC 239
            G    W++PN   ++  T  + N+   I   + I K + +    R+  + +  +   R  
Sbjct: 1159 GYDHAWVNPNSKLKLRATLGQCNLASSIVSDMNISKTLCIFESCRLYMSNDLTKDAVRFE 1218

Query: 240  GFGKREVQPMR 272
            G+G ++V P +
Sbjct: 1219 GYGTQKVSPKK 1229


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 530 RNVLPPRRRNCCRPSLEKTKPRLP 601
           R++L P+ R+C  PS++K+   LP
Sbjct: 51  RHMLTPKSRDCSEPSIDKSSEVLP 74


>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
           protein F26C11.3 protein.
          Length = 1317

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -2

Query: 284 SVAYAHWLYLSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDE 156
           S  Y  W  ++L K     L  C CV   +S      +FLD E
Sbjct: 137 SKQYEDWRNVTLIKGYERELEKCDCVLTSSSTETGTVKFLDRE 179


>U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical
           protein F13H8.5 protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +2

Query: 440 RKKAEKARTKMLSDQAEARRNKVRRHASAARNVLPPRRRNCCRPSLEKTKPRL 598
           R ++ K R + +     +    + R +  A  V PP++R   RP+ +  +PR+
Sbjct: 281 RPQSTKTRVQSVGGSVHSSSANIPRTSQPAAVVSPPQQRTFVRPNEQFQQPRV 333


>AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.8a protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 360 LSIFLAVLYFRSNFLK 313
           L++ LA++YFRSNF K
Sbjct: 8   LAVILAIIYFRSNFSK 23


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,296,574
Number of Sequences: 27780
Number of extensions: 297370
Number of successful extensions: 941
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)